Table 1.
List of identified genes in the C. canephora BAC 46C02.
| Gene Name | Product | Protein domain | Best BLASTN homology | Best BLASTX homology | Best BLASTN EST homology |
| 46C02_g1pb | Putative protein | pfam01843, DIL, DIL domain | NM_001064205 O. sativa (1e-148) | CAO70643 unnamed protein product V. vinifera (3e-119) | AJ796769 A. majus (0.0) |
| 46C02_g2 | Expressed Protein | pfam05764, YL1 nuclear protein | NM_129229 A. thaliana (5e-80) | NP_181212 DNA binding A. thaliana (1e-90) | DV701332 C. canephora (0.0; 99% id.) |
| 46C02_g3a | Putative protein | pfam02791, DDT domain | NM_117344 A. thaliana (9e-83) | CAO47883 V. vinifera (0.0) | DY269367 C. clementina (9e-133) |
| 46C02_g4 | Expressed protein | / | EF147735 P. trichocarpa (2e-52) | ABL97988 putative c-myc B. rapa (4e-35) | DV692405 C. canephora (2e-167; 100% id.) |
| 46C02_g5 | Expressed protein | pfam03479, DUF296, Domain of unknown function | AJ132349 A. majus (3e-96) | CAO65023 unnamed protein product V. vinifera (4e-65) | DV692183 C. canephora (0.0; 97% id.) |
| 46C02_g6c | CcEIN4 | cd00156, REC, Signal receiver domain | AF118844 L. esculentum (0.0) | AF118844 ethylene receptor L. esculentum (0.0) | CK272769 S. tuberosum (0.0) |
| 46C02_g7a | Expressed protein | pfam08242, Methyltransferase domain | BT014095 L. esculentum (8e-64) | CAO65026 unnamed protein product V. vinifera (2e-113) | DV685577 C. canephora (0.0; 99% id.) |
| 46C02_g8a | Putative protein | pfam03479, DUF296, Domain of unknown function | AM463589 V. vinifera (3E-158) | CAO65027 unnamed protein product V. vinifera (8e-83) | EB084622 C. annuum (3e-150) |
| 46C02_g9a | Putative protein | / | NM_111327 A. thaliana (7e-123) | CAO65029 unnamed protein product V. vinifera (5e-122) | BI925858 S. lycopersicum (3e-114) |
| 46C02_g10a | Putative protein | cd01926, cyclophilin_ABH_like | AK246441 S. lycopersicum (2E-112) | CAN61038 hypothetical protein V. vinifera (7e-70) | N980378 S. chacoense (1e-114) |
| 46C02_g11a | Putative protein | / | AM448871 V. vinifera (5E-75) | CAO65032 unnamed protein product V. vinifera (1e-112) | CK272594 S. tuberosum (2e-79) |
| 46C02_g12b | CcERF1 | smart00380, AP2 DNA-binding domain | AM441538 V. vinifera (7E-38) | CAO65033 unnamed protein product V. vinifera (3e-53) | CV262586 P. trichocarpa (3e-36) |
| 46C02_g13a | Putative protein | pfam00082, Peptidase_S8; cd02120, subtilisin_like | AP009276 S. lycopersicum (8e-170) | CAA06414 P69F protein S. lycopersicum (0.0) | CK269227 S. tuberosum (5e-108) |
| 46C02_g14 | Expressed protein | smart00156, PP2Ac, Protein phosphatase 2A | AJ002485 M. sativa (0.0) | BAF31132 subunit of protein phosphatase 1 V. faba (2e-168) | DV705485 C. canephora (0.0; 100% id.) |
| 46C02_g15 | Expressed protein | cd00180, Serine/Threonine protein kinase | AF453448 S. tuberosum (1e-161) | AF203481 carboxylase kinase L. esculentum (2e-126) | DV693205 C. canephora (0.0; 99% id.) |
| 46C02_g16 | Expressed protein | pfam01501, Glycosyl transferase family 8 | BT013608 L. esculentum (0.0) | CAO65058 unnamed protein product V. vinifera (0.0) | DV705148 C. canephora (0.0; 99% id.) |
| 46C02_g17b | Putative protein | pfam00067, Cytochrome P450 | CU104691 S. lycopersicum (2e-30) | CAO66223 unnamed protein product V. vinifera (2e-109) | CF513973 V. vinifera (1e-37) |
| 46C02_g18 | Putative protein | pfam07859, Abhydrolase_3 | AC209222.1 P. trichocarpa (1e-23) | CAO47785 unnamed protein product V. vinifera (1e-46) | DV677672 C. canephora (8e-94; 80% id.) |
| 46C02_g19 | Putative protein | cd00167 DNA-binding domains | EU181424 V. vinifera (6e-84) | AAB41101 transcription factor Myb1 N. tabacum (7e-60) | FC069164 V. vinifera (5e-84) |
| 46C02_g20b | Putative protein | Pfam00190, Cupin_1 | X82463 M. salicifolia (9e-27) | CAA57846 M. salicifolia (4e-82) | EE986213 N. nucifera (1e-23) |
| 46C02_g21 | tRNA Arg | / | CU104691 S. lycopersicum (9e-29) | / | EX530859 M. truncatula (5e-25) |
adetected by cDNA amplification, b not detected by cDNA amplification, p Partial gene, c Bustamante-Porras et al., 2006