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. Author manuscript; available in PMC: 2010 May 1.
Published in final edited form as: Proteins. 2009 May 1;75(2):308–322. doi: 10.1002/prot.22240

Table III.

Effects of Termini Changes on the NMR Structuring Diagnostics of -WIZGKW-a

Sequence Turn G Hairpin CSD (ppm)
ΔδHα <frCSD>b S-2 W Hε3 S+2 W Hε3 S+4 HNE
Ac-WINGKW-NH2 0.287 ≤0.45 (∼.42 CD) -0.378 -0.738 n. a.
Ac-TWINGKW-NH2 0.278 ≤0.30 (∼.1 CD) -0.570 -0.384 n. a.
PWIpGKW-NH2 n.a. c 0.79 ± 0.11 -0.269 -1.856 n. a.
Ac-WINGKWT 0.284 ≤0.45 -0.193 -0.603 n. a.
Ac-WINGKWT-NH2 0.393 0.77 ± 0.04 -0.380 -1.680 -2.7 d
Ac-WIPGKWTG-NH2 n.a. c < 0 > -0.05 0.05 -1.08
Ac-WIpGKWTG-NH2 n.a. c 0.95 ± 0.03 -0.25 -1.87 -3.06
Ac-WINGKWTG-NH2 0.404 0.78 ± 0.04 -0.379 -1.556 -2.71
WINGKWTG 0.079 0.15 ± 0.10 -0.05 -0.11 -1.11
TWINGKWTG 0.469 0.81 ± 0.10 -0.407 -1.923 -0.48
Ac-TWINGKWTG-NH2 0.454 0.69 ± 0.08 -0.528 -1.620 -1.05
ATWINGKWTG 0.519 ≅0.78 -1.354 -0.758 +0.11
KAVWINGKWTVE 0.589 ≅0.85 -1.922 -0.280 +0.55
a

CD melts for 7 of the peptides listed, including ATWINGKWTG (which has a mixed W/W geometry with the EtF form predominating) appear in a supporting Figure.

b

We employ the CSDs at six backbone sites in the common WIZGKW sequence to estimate the hairpin population; the backbone chemical shifts are given in full in the Supporting Information. The reported <frCSD> values are the average (and standard error) of the fHP values derived from these sites assuming that Ac-WIPGKWTG-NH2 represents zero folding and that the best folded species (Ac-WIpnKWTG-NH2) represents fHP = 0.98. This measure does not apply to the longer hairpins in the last two entries

c

The turn Gly ΔδHα measure does not apply to Pro-Gly turns16 and appear to be of diminished magnitude in NG species with the FtE W/W interaction. 100% folded values for Gly ΔδHα of NG turn hairpins from the literature are 0.55-0.72 ppm.16,27,33,34

d

CSD increases to -3.26 ppm at 270K in 20% glycol, with a proportionate increase in the S+2 Hε3 structuring shift.