Table 1.

Description of SNPs

SNPs	rs number	Codea	Position	Function	Hap SNPsb	Tag SNP	Allele freq.
TNF*707887	707887	R	24758650	UTR			0
MICB*2516412	2516412	M	31570300	Locus			0.139
BAT1*3219190	3219190	R	31605954	Intron			0
BAT1*11796	11796	W	31609191	Intron	*		0.367
UAP56*7126c	11796	W	31609191	Intron			0.405
BAT1*929138	929138	R	31611677	Intron	*		0.107
UAP56*1595	2516393	M	31614723	Locus	*	T1	0.095
BAT1*2071595	2071595	S	31615041	Intron	*	T2	0.189
BAT1*2239709	2239709	Y	31615426	Intron	*		0.191
BAT1*2239527	2239527	S	31617758	UTR	*	T3	0.5
BAT1*2523506	2523506	M	31617946	UTR	*		0.232
BAT1*2239528	2239528	R	31618084	Promoter	*		0.135
ATP6V1G2*2071593	2071593	Y	31620778	UTR			0
ATP6V1G2*2239705	2239705	Y	31621381	Coding			0.079
NFKBIL1-1068ATG	novel	R	31622382	Intron			0
NFKB-616d	novel	S	31622765	Locus			0
NFKBIL1-685ATG	novel	S	31622765	Locus			0
NFKBIL1*3219184	3219184	Y	31623119	Promoter	*		0.047
NFKB-63	2071592	W	31623319	Promoter	*		0.492
NFKBIL1*2230365	2230365	Y	31633427	Synonymous	*	T4	0.19
TNF*928815	928815	M	31639194	Locus	*		0.21
LTA*2009658	2009658	S	31646223	Locus	*		0.222
LTA*2516312	2516312	Y	31647414	Locus			0.008
LTA*2071590	2071590	Y	31647747	Locus	*		0.125
LTA*1800683	1800683	R	31648049	Locus			0.314
LTA*2239704	2239704	K	31648119	UTR			0.054
LTA*3093546	3093546	R	31648121	UTR			0
hLT-alpha_NcoI_B	909253	Y	31648292	UTR	*	T5	0.484
LTA*746868	746868	S	31648408	UTR	*	T6	0.19
LTA*+492	2857713	R	31648535	Nonsynone			0
LTA*3093542	3093542	S	31648672	Intron			0
LTA*3093543	3093543	M	31648736	Nonsynon			0
LTA*1041981	1041981	M	31648763	Nonsynon			0.47
LTA*4647195	4647195	Y	31648936	Intron			0
LTA*3093544	3093544	R	31649758	UTR			0
hTNF*1799964	1799964	Y	31650287	Locus	*		0.27
TNF*1799724	1799724	Y	31650461	Locus	*		0.059
LTA*4248158	4248158	Y	31650513	Locus			0.016
TNF*4248160	4248160	R	31650672	Locus			0.016
TNF*4248161	4248161	M	31650746	Locus			0
hTNF*1800629	1800629	R	31651010	Locus	*		0.063
hTNF*361525	361525	R	31651080	Locus			0.012
TNF*1800610	1800610	Y	31651806	UTR/intronic	*	T7	0.047
TNF*3093662	3093662	R	31652168	Intron			0.035
TNF*3093664	3093664	R	31652621	Intron	*		0.075
TNF*3093665	3093665	M	31653370	UTR			0
TNF*3093667	3093667	K	31653746	UTR			0
TNF*3093668	3093668	S	31654474	Intergenic	*	T8	0.047
TNF*3093726	3093726	Y	31654768	Intergenic			0
TNF*3093671	3093671	R	31654959	Intergenic			0
TNF*3093727	3093727	R	31655094	Intergenic			0
TNF*3091258	3091258	Y	31655439	Intergenic			0
LTB*769178	769178	M	31655493	5′ upstream			0
LTB+2591	769177	R	31655590	5′ upstream			0.018
LTB*3093559	3093559	R	31655771	Locus			0
LTB*3093557	3093557	Y	31656175	Locus			0
LTB*4645846	4645846	S	31656245	Locus			0
LTB*3093556	3093556	Y	31656430	UTR			0
LTB*3093555	3093555	S	31656869	UTR			0
LTB*3093553	3093553	M	31657535	Coding			0
LTB*4647175	4647175	Y	31659632	Locus			0.2
LST1*2256974	2256974	K	31663371	Intron			0.397
LST1*1052248	1052248	W	31664560	Coding	*	T9	0.313
1C7*986475	986475	Y	31664688	UTR	*		0.043
1C7*3179003	3179003	M	31664907	Nonsynon			0.024
1C7*2708	2708	R	31665770	Coding	*	T10	0.054
1C7-172ATG	11575837	S	31668649	Locus			0
1C7-412ATG	2736191	S	31668889	Locus	*	T11	0.46
AIF1*2259571	2259571	M	31691806	Intron	*	T12	0.492
AIF1*2269475	2269475	R	31691910	Coding	*		0.08
BAT2*2736158	2736158	S	31708283	Nonsynon	*	T13	0.25
BAT2*2272593	2272593	R	31709323	Nonsynon			0.023
BAT2*2242657	2242657	Y	31710468	Intron	*		0.102
BAT2*1046089	1046089	R	31710946	Nonsynon	*	T14	0.433
BAT2*2261033	2261033	Y	31711570	Intron	*	T15	0.331
BAT2 + 13510	17354367	S	31711749				0
BAT2*13716	13716	S	31711989	Synonymous			0.486
BAT2*10885	10885	Y	31712570	Nonsynon	*		0.065
BAT8 + 10309_B	555007	R	31958311				0.016
NFKBIL1*15811f	Not in chr6	R	158324741				0.293

^aAmbiguity code

^bSNP data used for haplotype construction

^cSame as BAT1*11796

^dSame as NFKBIL1-685ATG

^eNonsynonomous

^fNot in chromosome 6