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. 2009 Feb;15(2):288–291. doi: 10.3201/eid1502.080341

Table 1. Nucleotide and amino acid sequence comparisons of HPeV7 candidate prototype PAK5045 with the HPeV prototypes*.

Sequence % Nucleotide (amino acid) identity
HPeV1 HPeV2 HPeV3 HPeV4 HPeV5 HPeV6
5′ UTR 87.6 86.8 95.9 90.2 86.7 89.8
VP0 71.0 (76.8) 69.6 (75.8) 68.3 (72.3) 69.7 (75.1) 70.1 (75.4) 69.7 (73.7)
VP3 69.5 (75.3) 69.9 (74.1) 73.2 (83.9) 70.3 (77.5) 69.7 (74.0) 68.8 (74.0)
VP1 65.8 (69.9) 66.6 (69.5) 68.9 (77.0) 67.8 (68.6) 64.7 (66.4) 63.9 (65.0)
2A 77.9 (89.3) 75.2 (84.6) 77.5 (85.9) 80.8 (89.3) 80.5 (89.9) 76.5 (85.9)
2B 80.1 (95.9) 76.8 (95.1) 86.1 (99.2) 83.6 (99.2) 83.6 (97.5) 78.7 (96.7)
2C 78.9 (91.5) 76.5 (86.6) 83.8 (96.0) 85.9 (97.0) 80.9 (94.5) 79.5 (90.0)
3A 76.6 (88.0) 76.1 (83.8) 81.8 (94.0) 87.5 (96.6) 78.9 (82.9) 76.1 (89.7)
3B 73.3 (90.0) 75.0 (90.0) 76.7 (85.0) 85.0 (95.0) 76.7 (90.0) 70.0 (90.0)
3C 81.3 (98.0) 81.2 (98.0) 83.5 (98.0) 86.3 (98.0) 80.3 (99.0) 83.0 (99.0)
3D 83.2 (94.9) 82.8 (94.0) 88.7 (96.8) 90.8 (97.2) 83.8 (95.9) 83.6 (95.3)
3′ UTR 85.1 89.8 95.5 94.4 85.2 83.0
ORF 76.3 (86.7) 75.6 (84.8) 79.5 (89.1) 80.8 (88.5) 77.0 (86.6) 76.0 (85.4)

*Sequences for the HPeV prototypes, HPeV1 (Harris, S45208), HPeV2 (Williamson, AJ005695), HPeV3 (A308/99, AB084913), HPeV4 (K251176-02, DQ315670), HPeV5 (CT86-6760, AF055846), and HPeV6 (NII561–2000, AB252582), were obtained from GenBank. HPeV, human parechoviruses.

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