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Species classification among clusters described by Structure2.0 based on maximal individual-membership for each cluster.
| species | Kopt = 2 | Kopt = 4 | |||||
| Pop1 | Pop2 | popA | PopB | PopC | popD | ||
| S. lycopersicum | 1 | 112 | 1 | 0 | 23 | 89 | |
| S. lycopersicum var. cerasiforme | 20 | 124 | 13 | 10 | 78 | 43 | |
| S. pimpinellifolium | 58 | 3 | 21 | 35 | 3 | 2 | |
| Number of pairs of loci in LD (# of comparisons)a | 158(189) | 87(189) | 62(152) | 143(189) | 74(135) | 58(189) | |
a Pairs of markers were considered in significant LD using the threshold p-value < 0.001.
