Table 6.
Individual clustering, allelic diversity and proportion of loci in linkage disequilibrium in the four clusters inferred using Structure2.0 (n = 318)
| Group 1: 'wild' | Group 2: 'domesticated' |
'wild/domesticated' Admixed |
||||||
|
Number of individuals in each cluster |
Subgroup A |
Subgroup B |
AB Admixed |
Subgroup C |
Subgroup D |
CD Admixed |
||
| S. lycopersicuma | 1 | 0 | 0 | 16 | 81 | 12 | 3 | |
| cerasiformea | 3 | 6 | 1 | 59 | 19 | 22 | 34 | |
| S. pimpinellifoliuma | 13 | 30 | 7 | 1 | 0 | 0 | 10 | |
| total | 17 | 36 | 8 | 76 | 100 | 34 | 47 | |
| NA b | 2.9 | 6.2 | 2.8 | 4.15 | 3.4 | 3.3 | 4.7 | |
| HE c | 0.3275 | 0.5960 | 0.3852 | 0.2816 | 0.2245 | 0.2772 | 0.4595 | |
| LD (number of comparison) | 23/135 | 135/190 | 16/90 | 36/119 | 25/152 | 80/119 | 83/152 | |
a Individuals were classified in a cluster if their membership for this cluster was higher than 70%. a number of individual in each cluster. b allele number. c Expected heterozygosity