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. 2009 Feb 10;10:75. doi: 10.1186/1471-2164-10-75

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Copyright © 2009 Harris et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Predominant motifs identified in 800 nucleotide upstream region. Promoter analysis of the 800 nucleotide upstream region of sets of co-regulated genes, identified by overlapping the results of the four pairwise comparisons (groups 1, 2, 5, 6, 7, 8), using MEME. Motifs with an E-value < 10^-5and without long stretches of A and T (> 40% GC content) were included in the analyses. Consensus sequences were depicted using the web based application WebLogo, version 2.8.2 [86,87]. N denotes the number of genes with the motif compared to the number of genes in the co-regulated group.