Table 1.
ID primer | Gene | Direction | Sequence |
1 | pcbC | FWD | GAT TGG CGC TCC TCG TTC ACC |
2 | pcbC | REV | CCA TTA TTT TTC TAG TCG ACA TGG CAT CGA TTC CCA AGG CCA ATG TCC CC |
5 | LF 7-kb | FWD | GTT ACA CGC TTT GAT TCT GTG GGT ACC GAT GTT ATA TTC AGC TAC |
6 | LF | REV | CCC AAT AGC GGC CGC AGT TGA TAA TAT CAA TAT CTA AAA CTC CC |
7 | LF 5-kb | FWD | GGC ATA TAC GAG CAT GGT ACC AGG GAC AGA TGC CCA TCC TTG |
8 | LF 3-kb | FWD | GTA TAA AAG GGG AGG GTA CCG GGA AAG ATT TGT GGG CCT G |
9 | RF | FWD | GTA TGT AGC TGC GGC CGC CTC CGT CTT CAC TTC TTC GCC CGC ACT |
10 | RF 3-kb | REV | CCG CCT TCC TCA CTA ACC GGC CGG CAG GTA CCG ATG GAC TCA GCA TTA TC |
11 | RF 5-kb | REV | CTC TAG AAT GCT ACG GCC GTT CGA GGT ACC TTA TAG GAA AAA GGT AG |
12 | RF 7-kb | REV | CCT TTT CGC TGA GCG GCC GCA ATC ACA GGT ACC GTT TTT GTC GTC |
13 | amdS | FWD | ATG CCT CAA TCC TGG GAA GAA CTG |
14 | amdS | REV | CTT GAC GTA GAA GAC GGC ACC GGC |
15 | penDE | FWD | CCC GCA GCA CAT ATG CTT CAC ATC CTC TGT CAA GGC |
16 | penDE | REV | ATG ACA AAC ATC TCA TCA GGG |
17 | niaA | FWD | CAC AGA GAA TGT GCC GTT TCT TTG G |
18 | niaA | REV | TCA CAT ATC CCC TAC TCC CGA GCC |
19 | pcbAB | FWD | GAA GAC GTC ATA CTT ATT CTC TG |
20 | pcbAB | REV | CGG CAT CGG ATA AAG AGA TCT GG |
Primers used in this study (restriction sites are in bold). LF and RF, Left and Right flanking region respectively, location of the flanking region relative to the amdS-cassette (see Figure 1A). Size of the flanking region in kb. ID primer, uniquely numbered identifier of the primer used.