Table 2.
Disease Model | q† | α | β | γ | Deviance | p-Value |
---|---|---|---|---|---|---|
General Under H0 | 0.1073 | 0.2006 | 0.99 | 0.85 | 36.66* | <0.001 |
Recessive Under H0 | 0.0904 | 0.2001 | 1.0 | 0.94 | 29.71 | <0.001 |
Recessive Under Ha |
0.0911 |
0.2016 |
1.0 |
0.73 |
1.00 |
0.317 |
Likelihood Ratio Test of H0 vs. Ha | 28.71 | <0.001 |
This is the general χ2 statistic instead of the deviance defined as (8).
q is the frequency of the minor allele A.