Table 2.
Origins of the g20 sequences used in ‘meta’ phylogenetic analyses shown in Fig. 2.
# Sequences | Description | PCR-based? | Sequence label in Fig. 2 | Refs |
---|---|---|---|---|
512 | Environmental sequences from 42 oceanic sample sites from the GOS | N | JC# | 1 |
56 | Environmental sequences from 19 globally distributed freshwater and marine sites | Y | AY705# | 2 |
25 | Environmental sequences from Rhode Island coastal waters, USA | Y | AY259# | 3 |
43 | Environmental sequences from Lake Erie, USA | Y | DQ318# | 4 |
47 | Environmental sequences from Lake Bourget, France | Y | AY426# | 5 |
27 | Environmental sequences and mixed lysates from coastal north-western Atlantic Ocean | Y | Variable | 6 |
51 | Cultured marine cyanomyophages of variable coastal and open ocean origins | N/A | Variable | 3, 7 |
8 | Cultured non-cyanomyophages from sewage | N/A | Variable | 8 |
The ‘PCR-based’ column indicates whether the environmental sequence was obtained by PCR or metagenomic approaches (N/A indicates that this is not applicable for sequences from cultured phage isolates). Reference code: 1, Rusch and colleagues (2007); 2, Short and Suttle (2005); 3, Marston and Salee (2003); 4, Wilhelm and colleagues (2006); 5, Dorigo and colleagues (2004); 6, Zhong and colleagues (2002); 7, this study; 8, T4-like phage genomes website http://phage.bioc.tulane.edu/