TABLE 4.

Genes highly expressed in the pineal gland and/or the retina

Genes were identified from data generated in experiment C and represent the symbols shown in the corresponding sectors in Fig. 1. The supplemental Table S5 (sne.nichd.nih.gov) contains the gene titles, Entrez Gene identifiers, and the rEx values for individual genes. The supplemental Table S5 also includes Entrez Gene identifiers for unidentified sequences (i.e. expressed sequence tags) not included here. For details regarding the calculation of rEx values see “Experimental Procedures.”

Group	Gene symbol
Pineal	A2m, Aanat, Abca1, Abhd14b, Accn4, Acvr1, Adam2, Adra1b, Adrb1, Alox15, Als2cr4,aAmpd2, Anp32e, Arhgap24, Asl, Asmt, Atp6v1c2, Atp7b, Baiap2l1, Bzrp, Ca3, Cabp1, Cacna1h, Camk1g, Ccdc125, Ccl2, Ccl6, Ccl9, Ccnd2, Cd1d1, Cd24, Cd63, Cd8a, Cfd, Cflar, Chga, Chrna3, Chrnb4, Chst2,aCip98, Cntrob,aCol15a1, Col8a1,aCrcp, Crem, Crtac1, Ctsc, Cyp1a1, Dclk3,aDcn, Ddc, Defb24, Depdc7, Dhrs8, Dnajc12, Dpt,aDsc2, Dscr1, Esm1, Etnk1,aEya2, F5, Farp2,aFcer1a, Fdx1, Fkbp5, Fosl2, Frmd4b, Fzd4, G0s2, Gale, Galnt4, Galntl1, Gch, Gdf15, Gem,aGla, Gls, Gmds, Gnas, Hs3st2, Hsd3b7, Hspb1, Ifitm3, Igfbp6, Igsf1, Il13ra2, Il17re, Irak2, Irf7, Irs1, Isl2, Itgb2, Ka15, Kcne2, Kctd14,aKctd3, Kit, Klhl4, Krt1-19, Lad1,aLama2,aLamb1,aLgals1, Lgals3, Lhx4,aLix1,aLmbr1l, Lmod1,aLnx1,aLpl, Lrrc8e, Lum, Lxn, M6prbp1, Mad2l2, Mak10, Map4k1,aMat2a, Mcam, Me2,aMiox, Mitf, Morn1, Mpp3, Msrb2, Mt1a, Mtac2d1, Muc4, Mx2, Mylk,aMyo5b, Nacad, Ncaph, Nphp4, Nphs1, Nptx1, Nradd, Nrap,aNup107, Oasl1, Padi4, Pcbd1, Pde10a, Pde4b, Pgam2, Pgm1, Pid1, Pik3r3, Pla2g1b, Pla2g5, Plcd4, Plscr1, Postn,aPqlc1, Prkar2b, Prtg, Psph, Ptgis, Ptprn, PVR, Qscn6, Rarres1, Rasgrf2, Rere, Resp18, Ribc2, Rnase1, Rorb,aRreb1,aRxrg, Sall1,aScn7a, Sema3a, Serping1, Slc15a1, Slc17a6, Slc19a2, Slc1a5, Slc25a10, Slc39a4,aSlc47a1, Slc7a6,aSnf1lk, Sod3, Sorl1, Spink4, Tagln2, Tex14,aTm7sf2, Tnfrsf9, Ugdh, Vof16, Wnt10a,aZmat2, Zrsr1
Pineal, retina	Aipl1, Arr3, Cacna1f, Cnga1, Cngb1, Cplx3, Crocc,aCrx, Drd4, Egflam, Frmpd1,aGabrr1, Gnat2,aGnb3, Grk1, Guca1a,aHspa1b, Impg1, Impg2, Kcnh6, Kcnj14, Lamp3, Lrrc21, Mak, Mpp4, Neurod1, Opn1sw, Osap, Otx2, Pax4, Pcbp3, Pcdh21, Pdc, Pde6b,aPla2r1,aRax, Rbp3, Rds, Rom1, Rtbnd,aSag, Slc24a1, Slc6a6, Slco4a1, Stk22s1, Tulp1,aUnc119
Retina	Abca4,aAgpat3,aArf4l,aC1ql2, Calb2, Capn3, Cart, Cav, Cbln2, Cds1, Chrna6, Cirbp, Col11a1, Col2a1, Col5a3, Col9a1, Cryaa, Cryba1, Cryba2, Cryba4, Crybb1, Crybb2, Crybb3, Cryga, Crygb, Crygd, Cryge, Dapl1, Dkk3, Elovl4,aFscn2,aGlra2, Gnat1,aGnb1, Gpsm2, Gsg1, Hk2, Hmx1,aIgsf9,aIsl1, Kcnb1, Mab21l1, Mdm1, Msh5, Ng23, Opn1mw, Opn4, Pax6, Pcdh8, Pcp2, Pde6a,aPde6h, Ppap2c, Prom1, Rcvrn, Rdh11, Rdh12,aReep6, Rfrp, Rgr,aRho, Rhpn1,aRp1h, Six6,aSmarcd1,aSncg, St6galnac2, Stx3, Susd3,aSynpr, Tbc1d12,aTbx2,aTcfap2a,aTcfap2b,aTmem136, Txnl6,aVip, Vipr2, Wdr89

^aPredicted gene is indicated.