Table 2.

In silico comparison and comparative hybridization results for the two wbp gene clusters of PAO1

gene information			in silico analysis						comparative hybridization
			count of similarity classesa
PAO1 locus ID	PA14 locus ID	gene name	ident.	SNP	mism.	absent	total	average sequence similarity	detected oligosb	sensitivityb
PA3141	PA14_23470	wbpM	54	7	4	5	70	0.97	12	0.75
PA3142*	absent		4	3	4	1	12	0.93	7	0.88
PA3143*	absent		4	4	8	3	19	0.90	11	0.73
PA3144*	absent		1	0	4	0	5	0.91	4	1.00
PA3145*	PA14_23460	wbpL	0	0	3	33	36	0.71	35	0.97
PA3146*	PA14_23450	wbpK	0	0	6	28	34	0.71	33	0.97
PA3147*	absent	wbpJ	0	0	6	37	43	0.72	43	1.00
PA3148*	absent	wbpI	0	0	7	30	37	0.74	37	1.00
PA3149*	absent	wbpH	0	0	6	33	39	0.72	39	1.00
PA3150*	absent	wbpG	0	0	3	36	39	0.70	39	1.00
PA3151*	absent	hisF2	0	0	3	24	27	0.69	26	0.96
PA3152*	absent	hisH2	0	0	1	21	22	0.70	22	1.00
PA3153*	absent	wzx	0	0	1	43	44	0.71	43	0.98
PA3154*	absent	wzy	0	0	1	45	46	0.70	46	1.00
PA3155*	absent	wbpE	0	0	5	33	38	0.72	38	1.00
PA3156*	absent	wbpD	0	0	4	17	21	0.72	20	0.95
PA3157*	absent		0	0	14	51	65	0.73	64	0.98
PA3158*	absent	wbpB	0	0	7	26	33	0.74	33	1.00
PA3159*	absent	wbpA	0	0	14	32	46	0.73	46	1.00
PA3160	PA14_23360	wzz	0	0	5	31	36	0.71	36	1.00
PA3161	PA14_23340	himD	8	1	1	0	10	0.99	1	0.50
PA5447	PA14_71910	wbpZ	35	4	1	0	40	0.99	5	1.00
PA5448	PA14_71920	wbpY	34	5	0	0	39	0.99	2	0.40
PA5449	PA14_71930	wbpX	40	8	1	0	49	0.99	4	0.44
PA5450	PA14_71940	wzt	40	5	0	0	45	1.00	3	0.60
PA5451	PA14_71960	wzm	24	5	0	0	29	0.99	3	0.60
PA5452	PA14_71970	wbpW	42	6	1	0	49	0.99	4	0.57

* genes belonging to the PAO1 specific region.

^a see Figure 2 for a definition of the similarity classes.

^bdetermined for D_th = -0.5.