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Median signal ratio of SNPs grouped by the bases present in both alleles.
| corresponding PA14 sequencea | |||||
| A | C | G | T | ||
| PATA1 probe (PAO1)a | A | - | -0.50 | -0.51 | -0.41 |
| (1031) | (6807) | (326) | |||
| C | -0.24 | - | -0.35 | -0.30 | |
| (670) | (1283) | (5741) | |||
| G | -0.32 | -0.43 | - | -0.33 | |
| (5874) | (1309) | (687) | |||
| T | -0.49 | -0.57 | -0.45 | - | |
| (331) | (6574) | (952) | |||
Numbers in brackets indicate the abundance of each SNP in our data.
a mismatching nucleotide in the oligonucleotide probe and in the PA14 sequence, respectively.
