Table 1. Sequences and genomic locations of the probes.
Probe | Genomic Location | Sequence |
1 | ChrX: 66,481,078–66,481,135 | 5′ GGGTTCCCTAAGGGTTGGAGACTTAAGGGTACATAATAATGGGCAGTGG 3′ |
5′ ATTATGTGGACACCACAATTTGGAAGGGTCTAGATTGGATCTTGCTGGC 3′ | ||
2 | ChrX: 66,681,149–66,681,198 | 5′ GGGTTCCCTAAGGGTTGGAGCTTCAGCACTGCAGCCACGACCC 3′ |
5′ GCCTGGTTAGGCTGCACGCGGAGAGATCTAGATTGGATCTTGCTGGC 3′ | ||
3 | ChrX: 66,822,629–66,822,690 | 5′ GGGTTCCCTAAGGGTTGGACCGAAGGAAAAATTGTCCATCTTGTCGTCT 3′ |
5′ TCGGAAATGTTATGAAGCAGGGATGACTCTGGTCTAGATTGGATCTTGCTGGC 3′ | ||
4 | ChrX: 66,854,045–66,854,113 | 5′ GGGTTCCCTAAGGGTTGGAGCTTCCGCAACTTACACGTGGACGACCAGATGGCT 3′ |
5′ GTCATTCAGTACTCCTGGATGGGGCTCATGGTGTCTAGATTGGATCTTGCTGGC 3′ | ||
5 | ChrX: 66,858,400–66,858,453 | 5′ GGGTTCCCTAAGGGTTGGAGTACCGCATGCACAAGTCCCGGATGTA 3′ |
5′ CAGCCAGTGTGTCCGAATGAGGCACCTTCTAGATTGGATCTTGCTGGC 3′ | ||
6 | ChrX: 66,860,242–66,860,342 | 5′ GGGTTCCCTAAGGGTTGGACGAGAGAGCTGCATCAGTTCACTTTTGACCTGCTAATCAAG 3′ |
5′ TCACACATGGTGAGCGTGGACTTTCCGGAAATGATGGCAGAGATCTAGATTGGATCTTGCTGGC 3′ | ||
7 | Chr16: 3,772,843–3,772,914 | 5′ GGGTTCCCTAAGGGTTGGACCAGCTAGTGGAATTCAAAACACAATTGGTTCTGTTGGCACA 3′ |
5′ GGGCAACAGAATGCCACTTCTTTAAGTAACTCTAGATTGGATCTTGCTGGC 3′ | ||
8 | Chr22: 39,857,407–39,857,482 | 5′ GGGTTCCCTAAGGGTTGGACCAACCTAAGCACTGTTAGTCAGATTGATCCCAGCTCCAT 3′ |
5′ GAAAGAGCCTATGCAGCTCTTGGACTACCCTATCATCTAGATTGGATCTTGCTGGC 3′ |
Listed are the AR exonic and non-coding region probes (1–6), and control probes (7 and 8). Probes 7 and 8 were used as controls to normalize data and were designed in regions with no known CNV. Genomic location data based on human reference sequence (NCBI Build 36.1).