Table 2.
Protein | Pocket # | Ligands | Seq. Ident. | Rel. Ident. | Hs Ident. | Vol. (Å3) | Area (Å2) | Res. (Å) | Score |
---|---|---|---|---|---|---|---|---|---|
PNP | 1 | inhibitor (IMH) | 1.00 | 1.25 | 0.56 | 590 | 513 | 2.20 | −2.95 |
PNP | 2 | 1.00 | 1.25 | 0.50 | 274 | 290 | 2.20 | −2.56 | |
LDH | 1 | 1.00 | 1.07 | 0.56 | 466 | 406 | 1.70 | −2.49 | |
ENR* | 1 | inhibitor (TCC) | 1.00 | 1.17 | 0.57 | 410 | 362 | 2.35 | −2.47 |
TIM | 1 | 0.94 | 1.17 | 0.81 | 448 | 407 | 1.10 | −2.45 | |
DHFR-TS* | 3 | inhibitor (WRA) | 1.00 | 1.25 | 0.79 | 432 | 375 | 2.33 | −2.35 |
HGXPRT | 3 | 1.00 | 1.25 | 0.75 | 269 | 323 | 2.00 | −2.29 | |
PNP | 3 | 1.00 | 1.25 | 0.50 | 174 | 323 | 2.20 | −2.18 | |
PM2 | 1 | inhibitor (R37) | 0.88 | 1.28 | 0.80 | 518 | 485 | 1.80 | −2.15 |
AdSS | 3 | product (GDP) | 0.95 | 1.23 | 0.82 | 396 | 442 | 2.00 | −2.06 |
LDH | 2 | inhibitor (OXQ), cofactor | 1.00 | 1.07 | 0.76 | 420 | 390 | 1.70 | −1.88 |
KinI | 2 | 1.00 | 1.10 | 0.65 | 263 | 297 | 1.60 | −1.83 | |
AdSS | 2 | 0.94 | 1.22 | 0.83 | 469 | 348 | 2.00 | −1.65 | |
GR | 4 | 1.00 | 1.16 | 0.71 | 269 | 416 | 2.60 | −1.57 | |
ENR* | 2 | 0.94 | 1.10 | 0.63 | 381 | 412 | 2.35 | −1.57 | |
ENR* | 3 | 1.00 | 1.17 | 0.64 | 232 | 298 | 2.35 | −1.56 | |
KinI | 1 | 1.00 | 1.10 | 0.85 | 442 | 464 | 1.60 | −1.54 | |
ACBP | 1 | payload (COA), payload (MYR) | 0.85 | 1.22 | 0.77 | 318 | 367 | 2.00 | −1.41 |
DHFR-TS* | 7 | 1.00 | 1.25 | 0.69 | 210 | 210 | 2.33 | −1.36 | |
ENR | 2 | 0.94 | 1.10 | 0.63 | 295 | 355 | 2.35 | −1.23 |
Starred protein names indicate pockets in which a cofactor was included in the template structure. The columns indicate abbreviated protein name, pocket number of the original protein, presence of cofactor or ligand, sequence identity between P. falciparum and P. yoelii, relative sequence identity between pocket residues and other surface residues, sequence identity to H. sapiens, volume and area of each pocket, and resolution of original protein. See supplementary material for full table.