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. Author manuscript; available in PMC: 2009 Mar 25.
Published in final edited form as: J Comput Biol. 2008 Apr;15(3):231–240. doi: 10.1089/cmb.2007.0178

Table 2.

Top 20 pockets across the P. falciparum proteome ranked by drugability score.

Protein Pocket # Ligands Seq. Ident. Rel. Ident. Hs Ident. Vol. (Å3) Area (Å2) Res. (Å) Score
PNP 1 inhibitor (IMH) 1.00 1.25 0.56 590 513 2.20 −2.95
PNP 2 1.00 1.25 0.50 274 290 2.20 −2.56
LDH 1 1.00 1.07 0.56 466 406 1.70 −2.49
ENR* 1 inhibitor (TCC) 1.00 1.17 0.57 410 362 2.35 −2.47
TIM 1 0.94 1.17 0.81 448 407 1.10 −2.45
DHFR-TS* 3 inhibitor (WRA) 1.00 1.25 0.79 432 375 2.33 −2.35
HGXPRT 3 1.00 1.25 0.75 269 323 2.00 −2.29
PNP 3 1.00 1.25 0.50 174 323 2.20 −2.18
PM2 1 inhibitor (R37) 0.88 1.28 0.80 518 485 1.80 −2.15
AdSS 3 product (GDP) 0.95 1.23 0.82 396 442 2.00 −2.06
LDH 2 inhibitor (OXQ), cofactor 1.00 1.07 0.76 420 390 1.70 −1.88
KinI 2 1.00 1.10 0.65 263 297 1.60 −1.83
AdSS 2 0.94 1.22 0.83 469 348 2.00 −1.65
GR 4 1.00 1.16 0.71 269 416 2.60 −1.57
ENR* 2 0.94 1.10 0.63 381 412 2.35 −1.57
ENR* 3 1.00 1.17 0.64 232 298 2.35 −1.56
KinI 1 1.00 1.10 0.85 442 464 1.60 −1.54
ACBP 1 payload (COA), payload (MYR) 0.85 1.22 0.77 318 367 2.00 −1.41
DHFR-TS* 7 1.00 1.25 0.69 210 210 2.33 −1.36
ENR 2 0.94 1.10 0.63 295 355 2.35 −1.23
*

Starred protein names indicate pockets in which a cofactor was included in the template structure. The columns indicate abbreviated protein name, pocket number of the original protein, presence of cofactor or ligand, sequence identity between P. falciparum and P. yoelii, relative sequence identity between pocket residues and other surface residues, sequence identity to H. sapiens, volume and area of each pocket, and resolution of original protein. See supplementary material for full table.