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. 2008 Nov 20;364(1517):583–593. doi: 10.1098/rstb.2008.0195

Table 1.

Three nucleotide motif mutability index (MI)a for WT and mutant AID (S38A and S43P) at 2.5 min incubation with lacZα gapped region.

MI

motif WT S38A S43P pb
hot spots
AAC 2.5 1.5 1.6 0.41
AGC 1.3 2.1 2.0 0.06
TAC 3.4 2.0 2.2 0.22
TGC 2.6 2.2 2.6 0.99
MI average (WRC) 2.5 1.9 2.1
cold spots
CCC 0.28 0.52 0.44 0.65
CTC 0.45 0.76 0.53 0.99
GCC 0.05 0.18 0.05 0.07
GTC 0.32 0.67 0.00 0.99
MI average (SYC) 0.28 0.53 0.26
intermediates
ACC 1.2 0.32 0.35 0.02
ATC 1.0 0.63 0.71 0.97
CAC 1.4 0.91 0.96 0.31
CGC 0.5 1.3 1.4 0.004
GAC 0.24 0.5 0.35 0.79
GGC 0.23 0.78 1.0 0.0001
TCC 0.48 1.1 1.1 0.75
TTC 0.53 0.71 0.71 0.46
MI average 0.70 0.78 0.82
a

The MI is defined as the number of times a given trinucleotide motif within a segment of DNA contains a mutation, divided by the number of times the oligonucleotide would be expected to be mutated for a mechanism with no sequence bias.

b

The p-values were calculated by the paired Wilcoxon test (see Pham et al. 2008). Adapted from Pham et al. (2008).