Table 1.
Three nucleotide motif mutability index (MI)a for WT and mutant AID (S38A and S43P) at 2.5 min incubation with lacZα gapped region.
| MI | ||||
|---|---|---|---|---|
| motif | WT | S38A | S43P | pb |
| hot spots | ||||
| AAC | 2.5 | 1.5 | 1.6 | 0.41 |
| AGC | 1.3 | 2.1 | 2.0 | 0.06 |
| TAC | 3.4 | 2.0 | 2.2 | 0.22 |
| TGC | 2.6 | 2.2 | 2.6 | 0.99 |
| MI average (WRC) | 2.5 | 1.9 | 2.1 | |
| cold spots | ||||
| CCC | 0.28 | 0.52 | 0.44 | 0.65 |
| CTC | 0.45 | 0.76 | 0.53 | 0.99 |
| GCC | 0.05 | 0.18 | 0.05 | 0.07 |
| GTC | 0.32 | 0.67 | 0.00 | 0.99 |
| MI average (SYC) | 0.28 | 0.53 | 0.26 | |
| intermediates | ||||
| ACC | 1.2 | 0.32 | 0.35 | 0.02 |
| ATC | 1.0 | 0.63 | 0.71 | 0.97 |
| CAC | 1.4 | 0.91 | 0.96 | 0.31 |
| CGC | 0.5 | 1.3 | 1.4 | 0.004 |
| GAC | 0.24 | 0.5 | 0.35 | 0.79 |
| GGC | 0.23 | 0.78 | 1.0 | 0.0001 |
| TCC | 0.48 | 1.1 | 1.1 | 0.75 |
| TTC | 0.53 | 0.71 | 0.71 | 0.46 |
| MI average | 0.70 | 0.78 | 0.82 | |
The MI is defined as the number of times a given trinucleotide motif within a segment of DNA contains a mutation, divided by the number of times the oligonucleotide would be expected to be mutated for a mechanism with no sequence bias.
The p-values were calculated by the paired Wilcoxon test (see Pham et al. 2008). Adapted from Pham et al. (2008).