TABLE 1.
Crystallographic data collection and refinement statistics
| Structure | TPL-Ala | TPL-Met |
|---|---|---|
| Space group | P21212 | P21212 |
| Unit cell parameters | ||
| a (Å) | 132.9 | 132.9 |
| b (Å) | 143.7 | 143.3 |
| c (Å) | 59.6 | 59.7 |
| Resolution range (Å) | 20.0–1.89 (1.93–1.89)a | 30.0–1.95 (2.02–1.95) |
| No. of unique reflections | 89 055 (4 337) | 76 260 (6 854) |
| Rmerge (%)b | 7.0 (35.7) | 8.2 (42.5) |
| Average I/σ(I) | 12.2 (1.8) | 10.5 (2.3) |
| Data redundancyc | 3.7 (2.3) | 3.9 (3.6) |
| Completeness (%) | 97.3 (87.5) | 90.3 (82.3) |
| Wilson B-factor (Å2) | 18.9 | 27.1 |
| No. of reflections used in refinement | 87 930 (4 337) | 75 067 (7 386) |
| Rcryst (%)d | 15.8 (23.2) | 15.6 (19.2) |
| Rfree (%)d | 19.8 (30.2) | 19.2 (22.7) |
| No. of reflections used for Rfree | 1 065 (52) | 1 058 (116) |
| No. of protein residues | 912 | 912 |
| No. of water molecules | 966 | 887 |
| No. of ligands | 6 (2 K+, 2 alanine quinonoid molecules, 2 PEG fragments) | 6 (2 K+, 1 methionine quinonoid molecule, 1 PLP, 2 PEG fragments) |
| Average B-factor (Å2) | ||
| Chain A | 17.2 | 32.0 |
| Chain B | 14.3 | 29.5 |
| Water molecules | 29.6 | 41.2 |
| Overall | 17.4 | 32.0 |
| R.m.s. deviationse | ||
| Bond lengths (Å) | 0.016 (0.022) | 0.015 (0.022) |
| Bond angles (°) | 1.4 (2.0) | 1.4 (2.0) |
| Ramachandran plot (%)f | ||
| Favored | 98.1 | 97.9 |
| Outliers | 0.0 | 0.0 |
Values in parentheses are for the outer resolution shell
The value of the merging R-factor between equivalent measurements of the same reflection, Rmerge = (ΣhklΣi|<Ihkl> – Ihkl, i|)/(ΣhklΣi Ihkl, i)
The average observation of the same reflection
Crystallographic R-factors, R = (Σhkl||Fo, hkl| – |Fc, hkl||)/(Σhkl Fo, hkl|)
Target values are given in parentheses
Analyzed by MolProbity (30)