Analysis of CatS specificity. Library peptides with single amino
acid exchanges and the general sequence
GRWHTVGLRWE-Lys(Dnp)-DArg-NH2 were processed at a concentration of
20 μm for 30 min by 1.3 nm CatS. The reaction
mixtures were analyzed by HPLC, and UV peak areas were used for quantification
of substrate digestion. All of the assays were performed in triplicate. The
error bars denote the means ± standard deviation. The percentage of
substrate digestion is shown for peptides with P-3, P-2, P-1, P-1′,
P-2′, and P-3′ amino acid modifications. The x axis
represents the amino acid at the corresponding substrate position, designated
by the single-letter code (X, norleucine; Cit, citrulline).
The basis peptide of the library experiment is marked with an
asterisk. Preferred amino acids at each substrate position are marked
dark gray.