TABLE 3.
Characterization of wild-type TriA, AtzA, and the most improved AtzA variants derived by limited site saturation mutagenesisa
| Variant or position of variation in AtzA | Amino acid at position:
|
Km (μM) | kcat (s−1) | kcat/Km (s−1·M−1) | Hill coefficientb | ||||
|---|---|---|---|---|---|---|---|---|---|
| 216 | 217 | 219 | 220 | 250 | |||||
| TriA | A | I | P | A | D | 305 | 4.1 | 1.3 × 104 | 3.8 |
| AtzAc | A | T | T | A | D | >153 | 2.2 | 1.5 × 104 | ND |
| 357 | S | A | P | F | G | 67 | 2.3 | 3.4 × 104 | 3.6 |
| 288 | A | D | E | A | D | 49 | 4.3 | 8.8 × 104 | 2.8 |
| 305 | G | D | A | V | W | 95 | 6.2 | 6.5 × 104 | 2.5 |
| 422 | Y | D | Y | H | V | 92 | 6.5 | 7.1 × 104 | 3.5 |
| 297 | S | D | V | H | G | 92 | 6.8 | 7.4 × 104 | 3.3 |
| 662 | H | A | E | S | S | 100 | 7.4 | 7.4 × 104 | 3.4 |
| 431 | A | S | H | G | Y | 76 | 8.0 | 1.1 × 105 | 3.8 |
| 841 | S | D | G | S | D | 105 | 8.5 | 8.1 × 104 | 3.8 |
| 430 | G | D | G | H | G | 90 | 12.7 | 1.4 × 105 | 3.8 |
| 734 | G | D | G | H | D | 62 | 15.1 | 2.4 × 105 | 3.6 |
| Consensus | Y | D | T | H | E | 93 | 27.9 | 3.0 × 105 | 3.2 |
Kinetic data for atrazine dechlorination by AtzA and the AtzA variants were obtained using 4.6 to 153 μM atrazine and 10 nM enzyme. Kinetic data for melamine deamination by TriA were obtained using 80 to 560 μM melamine and 10 nM TriA. Values for the Km, the kcat, and the Hill coefficient for each enzyme varied by less than 10% in replicate experiments.
ND, not determined.
As the Km of wild-type AtzA for atrazine exceeded the water solubility of atrazine, it was not possible to directly determine the Km, kcat, or Hill coefficient for wild-type AtzA; the maximum rate of wild-type AtzA, normalized for enzyme concentration, was used in place of kcat.