Table I.
Up-regulated transcripts in BY-2 cells overexpressing NtmybA2ΔC
cDNA clones with overlapping sequences are shown in the same row representing the data of both clones. In such cases, expression data from the two array spots were jointly used for statistical analysis to calculate fold change and P value.
| Fold Change | P Value | Gene ID | Phasea | Classb | Scorec | Annotation/Closest Homolog |
|---|---|---|---|---|---|---|
| 11.78 | 1.25E-04 | 39297 | M | A | 122 | Glycosyl hydrolase family 17 (Arabidopsis thaliana) |
| 7.18 | 2.20E-03 | 23145 | 328 | Patatin homolog (Nicotiana tabacum) | ||
| 7.03 | 1.01E-03 | 30077 | ||||
| 6.45 | 4.53E-03 | 29189/35265 | M | A/C | 95/84 | Thionin-like protein (Nicotiana tabacum) |
| 5.40 | 4.01E-03 | 26092/21549 | M | C | 73/72 | Protease inhibitor/seed storage/lipid transfer protein (LTP) family (Arabidopsis thaliana) |
| 5.04 | 4.80E-03 | 4484 | M | A | 36 | Microtubule-binding protein TAN1 (Arabidopsis thaliana) |
| 4.96 | 1.02E-03 | 27097 | ||||
| 4.79 | 8.19E-03 | 39367 | M | A | NACK1 kinesin (Nicotiana tabacum) | |
| 4.77 | 1.98E-03 | 27273/27065 | 113/104 | Unnamed protein product (Vitis vinifera) | ||
| 4.60 | 4.37E-03 | 1033 | M | A | 317 | B-type cyclin (Nicotiana tabacum) |
| 4.52 | 3.45E-03 | 28271 | M | A | ||
| 4.40 | 2.03E-03 | 5022 | M | A | 194 | Pentatricopeptide (PPR) repeat-containing protein (Arabidopsis thaliana) |
| 4.14 | 9.81E-06 | 6323 | M | A | 91.7 | Unnamed protein product (Vitis vinifera) |
| 4.12 | 7.69E-03 | 2455 | 70 | Putative cytochrome P450 (Oryza sativa, japonica group) | ||
| 4.07 | 1.98E-03 | 27045 | M | A | ||
| 3.92 | 3.69E-02 | 31040 | ||||
| 3.72 | 7.80E-04 | 6751 | M | B | 68.2 | Pectinesterase family protein (Brassica oleracea) |
| 3.53 | 2.38E-04 | 3201/2259 | S | I | 71.2/66 | Invertase/pectin methylesterase inhibitor family protein (Arabidopsis thaliana) |
| 3.43 | 2.32E-02 | 1005 | M | B | 384 | β-d-Glucan exohydrolase (Nicotiana tabacum) |
| 3.40 | 1.69E-03 | 1117 | M | A | 103 | Unnamed protein product (Vitis vinifera) |
| 3.37 | 9.60E-04 | 4820 | M | A | 46 | Hypothetical protein (Arabidopsis thaliana) |
| 3.33 | 6.93E-03 | 6658 | 70 | Auxin-induced (indole-3-acetic acid-induced) protein family (Arabidopsis thaliana) | ||
| 3.31 | 2.69E-04 | 24242 | M | B | 185 | Knolle (Capsicum annuum) |
| 3.29 | 1.64E-02 | 30283 | 53 | UP-9A (sulfur starvation-induced gene; Nicotiana tabacum) | ||
| 3.27 | 7.93E-03 | 10087 | M | A | ||
| 3.20 | 1.98E-02 | 2608 | 159 | Unnamed protein product (Vitis vinifera) | ||
| 3.19 | 2.02E-04 | 30017/24314 | M | B | 148/53.1 | Nonsymbiotic hemoglobin class 1 (Solanum lycopersicum) |
| 3.14 | 4.23E-03 | 22336 | M | A | 120 | Phytocyanin-like arabinogalactan protein (Gossypium hirsutum) |
| 3.11 | 7.73E-04 | 21354 | M | A | 216 | Cyclin-specific ubiquitin carrier protein, putative (Arabidopsis thaliana) |
| 3.10 | 5.51E-03 | 11337 | M | A | 106 | Unnamed protein product (Vitis vinifera) |
| 3.03 | 3.75E-03 | 6370 | 120 | Unnamed protein product (Vitis vinifera) | ||
| 3.02 | 1.79E-02 | 6468 | 78.2 | Gly-rich protein (Nicotiana tabacum) |
a
The cell cycle phase of peak expression for each cell cycle-regulated clone.
b
Classes representing defined patterns of cell cycle-regulated expression in the synchronized cultures.
c
Scores for the highest hit in the BLASTX search.