Table 1. Previously Reported Markers for the Evaluation of Rice Eating Quality and Their Chromosomal Locations.
primer sequence |
||||
---|---|---|---|---|
PCR marker | marker type | chra | forward (5′−3′) | reverse (5′−3′) |
Ohtsubo et al. (13,17) Ohtsubo and Nakamura (12) | ||||
A6 | STS | 7 | CCAGCTGTACGCCTGTACTAC | CCAGCTGTACGTCTTCCCCAGC |
A7 | STS | 12 | TGCCTCGCACCAGAAATAG | TGCCTCGCACCATGAG |
B1 | STS | 11 | GTTTCGCTCCTACAGTAATTAAGGG | GTTTCGCTCCCATGCAATCT |
B43 | STS | 9 | GGCCGGCATGACTCAC | ACTGGCCGGCATCAAGAC |
F6 | STS | 4 | ACCACTCCATATATATCATCCAAAG | ACCACTCCATATCACCACAAGG |
G4 | STS | 1 | GAGACCGATATGCGATTC | GTGGTGTTTAGATCCAGAGACTTA |
G22 | STS | 9 | CTCACTCAAATTTACAGTGCATTTTCTTG | AGGGCCATGATACAAGACTCTGT |
G28 | STS | 1 | GGCGGTCGTTCTGCGAT | GGAGAATCCCACAGTAAGTTTTTCTTTG |
J6 | STS | 11 | GTCGGAGTGGTCAGACCG | GTCGGAGTGGATGGAGTAGC |
M2CG | STS | 8 | ACAACGCCTCCGATGA | ACAACGCCTCCGACAACAAGAT |
M11 | STS | 6 | GTCCACTGTGACCACAACAT | GTCCACTGTGGGGATTGTTC |
P5 | STS | 10 | ACAACGGTCCGTCCTTGCTT | ACAACGGTCCAACAGATACTTTTGA |
S13 | STS | 1 | GTCGTTCCTGTGGTTAGGACAGGGT | GTCGTTCCTGCTGGTGTCTCAGAT |
T16 | STS | 12 | GGTGAACGCTGTAGTTGGAATATA | GGTGAACGCTCAGATTTAAATATAAT |
WK9 | STS | 9 | CCCGCAGTTAGATGCACCATT | CCGCAGTTAGATCAAGTGGC |
E30 | STS | 1 | TACCTGGTTGATGTATACAGATCTGGTT | ATCCCTCGATCCCTCTAGCATTAT |
B7 | STS | 2 | CAGGTGTGGGTTACAAGGATGA | CAGGTGGTTCACGGCCTTT |
G49A | STS | 11 | AATCCAGACATGAAATTTATATGCAGATA | AATCCAGACATGTTGTCCTCAATTTTTG |
G81 | STS | 6 | TACCTGAACCAGCAAGCATGCGCG | TACCTGAACCAGTATAATCTTTG |
P3 | STS | 5 | AACGGGCCAAAAACGGAGGT | AACGGGCCAACGCAG |
Bao et al. (2, 3) | ||||
Wx (SNP) | dCAPS/AccI | 6 | CTTTGTCTATCTCAAGACAC | TTTCCAGCCCAACACCTTAC |
SS1 (SSR) | SSR | 6 | GATCCGTTTTTGCTGTGCCC | CCTCCTCTCCGCCGATCCTG |
SBE1 (SSR) | SSR | 6 | ATTTCTTTGGCCACAGGCGA | CCCAGATTCGGAACAAGAAC |
SBE1 (STS) | STS | 6 | GAGTTGAGTTGCGTCAGATC | AATGAGGTTGCTTGCTGCTG |
SBE3 (SNP) | dCAPS/SpeI | 2 | GTCTTGGACTCAGATGCTGGACTC | ATGTATAACTGGCAGTTCGAACGG |
SSIIa | SNP | 6 | F7: CTGGATCACTTCAAGCTGTACGAC | R1: GCCGGCCGTGCAGATCTTAAC |
F22: CAAGGAGAGCTGGAGGGGGC | R21: ACATGCCGCGCACCTGGAAA |
Chromosome location.