Table 1. Previously Reported Markers for the Evaluation of Rice Eating Quality and Their Chromosomal Locations.
| primer sequence |
||||
|---|---|---|---|---|
| PCR marker | marker type | chra | forward (5′−3′) | reverse (5′−3′) |
| Ohtsubo et al. (13,17) Ohtsubo and Nakamura (12) | ||||
| A6 | STS | 7 | CCAGCTGTACGCCTGTACTAC | CCAGCTGTACGTCTTCCCCAGC |
| A7 | STS | 12 | TGCCTCGCACCAGAAATAG | TGCCTCGCACCATGAG |
| B1 | STS | 11 | GTTTCGCTCCTACAGTAATTAAGGG | GTTTCGCTCCCATGCAATCT |
| B43 | STS | 9 | GGCCGGCATGACTCAC | ACTGGCCGGCATCAAGAC |
| F6 | STS | 4 | ACCACTCCATATATATCATCCAAAG | ACCACTCCATATCACCACAAGG |
| G4 | STS | 1 | GAGACCGATATGCGATTC | GTGGTGTTTAGATCCAGAGACTTA |
| G22 | STS | 9 | CTCACTCAAATTTACAGTGCATTTTCTTG | AGGGCCATGATACAAGACTCTGT |
| G28 | STS | 1 | GGCGGTCGTTCTGCGAT | GGAGAATCCCACAGTAAGTTTTTCTTTG |
| J6 | STS | 11 | GTCGGAGTGGTCAGACCG | GTCGGAGTGGATGGAGTAGC |
| M2CG | STS | 8 | ACAACGCCTCCGATGA | ACAACGCCTCCGACAACAAGAT |
| M11 | STS | 6 | GTCCACTGTGACCACAACAT | GTCCACTGTGGGGATTGTTC |
| P5 | STS | 10 | ACAACGGTCCGTCCTTGCTT | ACAACGGTCCAACAGATACTTTTGA |
| S13 | STS | 1 | GTCGTTCCTGTGGTTAGGACAGGGT | GTCGTTCCTGCTGGTGTCTCAGAT |
| T16 | STS | 12 | GGTGAACGCTGTAGTTGGAATATA | GGTGAACGCTCAGATTTAAATATAAT |
| WK9 | STS | 9 | CCCGCAGTTAGATGCACCATT | CCGCAGTTAGATCAAGTGGC |
| E30 | STS | 1 | TACCTGGTTGATGTATACAGATCTGGTT | ATCCCTCGATCCCTCTAGCATTAT |
| B7 | STS | 2 | CAGGTGTGGGTTACAAGGATGA | CAGGTGGTTCACGGCCTTT |
| G49A | STS | 11 | AATCCAGACATGAAATTTATATGCAGATA | AATCCAGACATGTTGTCCTCAATTTTTG |
| G81 | STS | 6 | TACCTGAACCAGCAAGCATGCGCG | TACCTGAACCAGTATAATCTTTG |
| P3 | STS | 5 | AACGGGCCAAAAACGGAGGT | AACGGGCCAACGCAG |
| Bao et al. (2, 3) | ||||
| Wx (SNP) | dCAPS/AccI | 6 | CTTTGTCTATCTCAAGACAC | TTTCCAGCCCAACACCTTAC |
| SS1 (SSR) | SSR | 6 | GATCCGTTTTTGCTGTGCCC | CCTCCTCTCCGCCGATCCTG |
| SBE1 (SSR) | SSR | 6 | ATTTCTTTGGCCACAGGCGA | CCCAGATTCGGAACAAGAAC |
| SBE1 (STS) | STS | 6 | GAGTTGAGTTGCGTCAGATC | AATGAGGTTGCTTGCTGCTG |
| SBE3 (SNP) | dCAPS/SpeI | 2 | GTCTTGGACTCAGATGCTGGACTC | ATGTATAACTGGCAGTTCGAACGG |
| SSIIa | SNP | 6 | F7: CTGGATCACTTCAAGCTGTACGAC | R1: GCCGGCCGTGCAGATCTTAAC |
| F22: CAAGGAGAGCTGGAGGGGGC | R21: ACATGCCGCGCACCTGGAAA | |||
Chromosome location.