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. 2009 Mar 13;57(7):2754–2762. doi: 10.1021/jf803804k

Table 1. Previously Reported Markers for the Evaluation of Rice Eating Quality and Their Chromosomal Locations.

      primer sequence
PCR marker marker type chra forward (5′−3′) reverse (5′−3′)
Ohtsubo et al. (13,17) Ohtsubo and Nakamura (12)
A6 STS 7 CCAGCTGTACGCCTGTACTAC CCAGCTGTACGTCTTCCCCAGC
A7 STS 12 TGCCTCGCACCAGAAATAG TGCCTCGCACCATGAG
B1 STS 11 GTTTCGCTCCTACAGTAATTAAGGG GTTTCGCTCCCATGCAATCT
B43 STS 9 GGCCGGCATGACTCAC ACTGGCCGGCATCAAGAC
F6 STS 4 ACCACTCCATATATATCATCCAAAG ACCACTCCATATCACCACAAGG
G4 STS 1 GAGACCGATATGCGATTC GTGGTGTTTAGATCCAGAGACTTA
G22 STS 9 CTCACTCAAATTTACAGTGCATTTTCTTG AGGGCCATGATACAAGACTCTGT
G28 STS 1 GGCGGTCGTTCTGCGAT GGAGAATCCCACAGTAAGTTTTTCTTTG
J6 STS 11 GTCGGAGTGGTCAGACCG GTCGGAGTGGATGGAGTAGC
M2CG STS 8 ACAACGCCTCCGATGA ACAACGCCTCCGACAACAAGAT
M11 STS 6 GTCCACTGTGACCACAACAT GTCCACTGTGGGGATTGTTC
P5 STS 10 ACAACGGTCCGTCCTTGCTT ACAACGGTCCAACAGATACTTTTGA
S13 STS 1 GTCGTTCCTGTGGTTAGGACAGGGT GTCGTTCCTGCTGGTGTCTCAGAT
T16 STS 12 GGTGAACGCTGTAGTTGGAATATA GGTGAACGCTCAGATTTAAATATAAT
WK9 STS 9 CCCGCAGTTAGATGCACCATT CCGCAGTTAGATCAAGTGGC
E30 STS 1 TACCTGGTTGATGTATACAGATCTGGTT ATCCCTCGATCCCTCTAGCATTAT
B7 STS 2 CAGGTGTGGGTTACAAGGATGA CAGGTGGTTCACGGCCTTT
G49A STS 11 AATCCAGACATGAAATTTATATGCAGATA AATCCAGACATGTTGTCCTCAATTTTTG
G81 STS 6 TACCTGAACCAGCAAGCATGCGCG TACCTGAACCAGTATAATCTTTG
P3 STS 5 AACGGGCCAAAAACGGAGGT AACGGGCCAACGCAG
Bao et al. (2, 3)
Wx (SNP) dCAPS/AccI 6 CTTTGTCTATCTCAAGACAC TTTCCAGCCCAACACCTTAC
SS1 (SSR) SSR 6 GATCCGTTTTTGCTGTGCCC CCTCCTCTCCGCCGATCCTG
SBE1 (SSR) SSR 6 ATTTCTTTGGCCACAGGCGA CCCAGATTCGGAACAAGAAC
SBE1 (STS) STS 6 GAGTTGAGTTGCGTCAGATC AATGAGGTTGCTTGCTGCTG
SBE3 (SNP) dCAPS/SpeI 2 GTCTTGGACTCAGATGCTGGACTC ATGTATAACTGGCAGTTCGAACGG
SSIIa SNP 6 F7: CTGGATCACTTCAAGCTGTACGAC R1: GCCGGCCGTGCAGATCTTAAC
      F22: CAAGGAGAGCTGGAGGGGGC R21: ACATGCCGCGCACCTGGAAA
a

Chromosome location.