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. Author manuscript; available in PMC: 2010 Feb 12.
Published in final edited form as: J Med Chem. 2009 Feb 12;52(3):779–797. doi: 10.1021/jm801220a

Table 5.

The physicochemical data related to the absorption and biomembrane permeability of inhibitors

Compounds ClogP TPSA ClogD (pH=7.4) Hb-A Hb-D MW RB
1 -7.000 217.968 -5.42 10 10 318.338 9
2 -6.267 203.972 -6.57 10 9 330.349 7
3 -6.172 203.972 -6.4 10 9 330.349 7
4 -5.787 157.803 -5.88 7 8 247.303 8
5 -3.270 157.803 -4.07 6 8 323.401 8
6 -1.329 88.992 -5.16 4 6 235.331 5
7 1.364 74.996 -2.82 4 5 325.456 8
16 2.576 74.996 -1.81 4 5 373.928 8
17 2.576 74.996 -1.72 4 5 373.928 8
24 2.052 74.996 -2.44 4 5 353.509 9
25 2.195 74.996 -2.38 4 5 371.5 9
26 2.195 74.996 -2.36 4 5 371.5 9
29 2.885 74.996 -1.49 4 5 387.955 8
30 3.220 66.207 -0.91 4 4 387.955 8
31 2.838 66.207 -1.81 4 4 385.527 9
32 3.432 57.418 -1 4 3 399.554 9

Hb-A: sum of H-bond acceptors; Hb-D: sum of H-bond donors; MW: Molecular Weights; RB: number of freely rotating bonds. ClogP values for the inhibitors were calculated by ClogP program version 4.2 in the SYBYL 6.8 environment with a special license from BioByte Corporation.37 Log D values for the inhibitors were calculated by ACD/logD at pH 7.4.38 The topological molecular polar surface areas (TPSA) were calculated by the atom-based method of Ertl, et al.36