Table 5. “Jackknifing” the gamma HMM: Removing one group of the training set and detecting the group removed in chromosome 19.

Model	no_hervI	no_erv9	no_hervH	no_hervT
# match states	130	110	110	130
Threshold	5	5	5	5
Sensitivity (including removed group) %	38	35	34	43
Specificity (%)	75	70	72	73
% detection of removed gamma group	4.9	60	9.8	22