Table 5. “Jackknifing” the gamma HMM: Removing one group of the training set and detecting the group removed in chromosome 19.
Model | no_hervI | no_erv9 | no_hervH | no_hervT |
# match states | 130 | 110 | 110 | 130 |
Threshold | 5 | 5 | 5 | 5 |
Sensitivity (including removed group) % | 38 | 35 | 34 | 43 |
Specificity (%) | 75 | 70 | 72 | 73 |
% detection of removed gamma group | 4.9 | 60 | 9.8 | 22 |