Table 2.
Centromere composition: detailed repeat composition
| DIRS |
DDT |
Tdd |
Skipper |
||||||
|---|---|---|---|---|---|---|---|---|---|
| Bases | cf (%) | >4 kb | Bases | cf (%) | Bases | cf (%) | Bases | cf (%) | |
| Chr1 | 80 920 | 30 (46.5) | 8 | 38 294 | 35 (22.0) | 1470 | 3 (0.9) | 19 098 | 4 (11.0) |
| Chr2 outer | 187 275 | 71 (51.8) | 17 | 69 510 | 78 (19.2) | 7404 | 5 (2.1) | 21 397 | 15 (5.9) |
| Chr2 inner | 15 254 | 4 (42.3) | 2 | 6421 | 6 (17.8) | 4640 | 2 (12.9) | 4930 | 2 (13.7) |
| Chr3 | 89 365 | 39 (46.7) | 7 | 33 966 | 32 (17.7) | 8383 | 4 (4.4) | 27 702 | 13 (14.5) |
| All | 372 814 | 144 (48.8) | 34 | 148 191 | 151 (19.4) | 21 897 | 14 (2.9) | 73 127 | 34 (9.6) |
cf, contigous fragments. % refers to the percentage of the centromere region that consists of the given repeat.