Table 3.
Top scoring entries for search with RNase T1 digested T. thermophilus 16S rRNA in the RDP 16S rRNA database
| Rank | Score | Z-score | Organism | GenBank accession |
|---|---|---|---|---|
| 1 | 364 | 55 | T. thermophilus JN2 | AY554280 |
| 1 | 364 | 55 | T. thermophilus | AY497773 |
| 1 | 364 | 55 | T. thermophilus | No information |
| 1 | 364 | 55 | T. thermophilus E26 | DQ087525 |
| 5 | 362 | 54 | T. thermophilus HB27 | AE017221a |
| 5 | 362 | 54 | T. thermophilus HB8 | AP008226a |
| 5 | 362 | 54 | T. thermophilus HB27 | AE017221a |
| 5 | 362 | 54 | T. thermophilus HB8 | AP008226a |
| 9 | 360 | 54 | T. thermophilus L1 | AY788091 |
| 10 | 358 | 53 | T. thermophilus CS | AJ251938 |
| . . . | . . . | . . . | . . . | |
| 19 | 339 | 49 | T. thermophilus HB8 | X07998 |
| 20 | 313 | 43 | S000345626 uncultured bacterium; G24 | AF407704 |
The 10 highest scoring entries as well as number 19 and 20 are specified.
aEach identified rRNA represents one of the two copies present in the T. thermophilus genome.