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. Author manuscript; available in PMC: 2009 Nov 27.
Published in final edited form as: J Phys Chem B. 2008 Nov 27;112(47):15227–15243. doi: 10.1021/jp806814s

Figure 15.

Figure 15

Areas of high water density (light blue, ≥ 0.23 water oxygens per Å3) located in part (a) of the simulated structure, superimposed on the crystal structure of the complex with paromomycin (PDB entry 1J7T); van der Waals spheres denote the U1406(b)○U1495(b) pair (in brown) and A/G1408(b), A1492(b), A1493(b) (in orange); smaller spheres symbolize crystal water oxygen atoms, the ones which were identified in the simulation are marked in green and the ones discussed in the text are numbered.