Official websites use .gov
A
.gov website belongs to an official
government organization in the United States.
Secure .gov websites use HTTPS
A lock (
) or https:// means you've safely
connected to the .gov website. Share sensitive
information only on official, secure websites.
Types of MD simulations and their abbreviations used in the text. PRO denotes simulations performed for the prokaryotic RNA sequence with A1408 and EU—for the A1408G mutated structure corresponding to eukaryotic-like sequence.
| Amber | Charmm | ||
|---|---|---|---|
| prokaryotic (A1408) | with paromomycin | — | CHARMM_PRO_PAR |
| without paromomycin | AMBER_PRO | CHARMM_PRO | |
| eukaryotic (G1408) | with paromomycin | — | CHARMM_EU_PAR |
| without paromomycin | AMBER_EU | CHARMM_EU | |
