Table 1. Description of Simulationsa.
system name | crystal structure | description | simulation time, ns | no. of atoms |
---|---|---|---|---|
N1ac | 2HU4 | N1-apo, closed | 16 | 5389 |
N1ao | 2HTY | N1-apo, open | 16 | 5389 |
N1hc | 2HU4 | N1-holo, closed | 15.9 | 5433 |
N1ho | 2HU0 | N1-holo, open | 16 | 5433 |
N9a | 2QWK | N9-apo, closed | 16 | 5526 |
N9h | 2QWK | N9-holo, closed | 16 | 5568 |
N1-tetramer | 2HU4 | N1 tetramer, holo, closed | 5 | 21732 |
Seven simulations of the N1 (group-1, avian) and N9 (group-2, human) neuraminidases are summarized with their system name, initial PDB structure identifier, brief description, total simulation time, and number of atoms. The system names listed here are used throughout the figures and text.