Table 3. RMSF per Hot-Spot Residue for the Six Simulationsa.
N1ao | N1ac | N1ho | N1hc | N9a | N9h | ||
---|---|---|---|---|---|---|---|
Sialic Acid Region | |||||||
R | 118 | 0.57 | 0.54 | 0.51 | 0.51 | 0.42 | 0.48 |
E | 119 | 0.56 | 0.55 | 0.65 | 0.61 | 0.44 | 0.48 |
R | 224 | 0.47 | 0.49 | 0.48 | 0.61 | 0.42 | 0.43 |
E | 227 | 0.48 | 0.53 | 0.52 | 0.65 | 0.44 | 0.45 |
S | 246 | 1.13 | 1.01 | 1.02 | 1.31 | ||
E | 277 | 0.57 | 0.6 | 0.49 | 0.56 | 0.47 | 0.41 |
R | 371 | 0.77 | 0.78 | 0.83 | 0.8 | 0.79 | 0.73 |
Y | 406 | 0.47 | 0.55 | 0.48 | 0.54 | 1 | 0.55 |
150-Loop Region | |||||||
V | 116 | 0.68 | 0.64 | 0.49 | 0.69 | 0.51 | 0.55 |
Q | 136 | 0.81 | 0.74 | 0.87 | 0.77 | 0.78 | 0.79 |
V | 149 | 2.31 | 1.53 | 1.21 | 2.82 | ||
D | 151 | 1.52 | 0.99 | 0.71 | 1.66 | 0.98 | 0.69 |
R | 152 | 1.26 | 0.96 | 0.79 | 1.32 | 0.95 | 0.79 |
S | 153 | 1.22 | 0.94 | 0.83 | 1.23 | 0.97 | 0.85 |
P | 154 | 1.24 | 0.98 | 0.93 | 1.22 | ||
R | 156 | 0.69 | 0.64 | 0.59 | 0.62 | 0.54 | 0.59 |
W | 178 | 0.56 | 0.5 | 0.77 | 0.57 | 0.44 | 0.44 |
S | 179 | 0.48 | 0.47 | 0.66 | 0.51 | 0.4 | 0.41 |
S | 195 | 0.64 | 0.6 | 0.64 | 0.79 | 0.54 | 0.56 |
G | 196 | 0.77 | 0.76 | 0.81 | 1.19 | 0.72 | 0.74 |
The first column lists the residue type, the second column lists the residue number, and the third through eighth columns list the RMSF per residue for the N1-apo-open, N1-apo-closed, N1-holo-open, N1-holo-closed, N9-apo, and N9-holo systems, respectively.