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. Author manuscript; available in PMC: 2009 Apr 6.
Published in final edited form as: J Chem Theory Comput. 2008;4(12):2067–2084. doi: 10.1021/ct800330d

Table 6.

Errors in the SCC-DFTBPR optimized structures for species involved in the hydrolysis reactions included in the parameterizationa

Error Analysisb
Structures Propertya
MAXE RMSE MUE MSE
Stable states P-Oc 0.41/−0.12 0.05/0.02 0.02/0.02 0.00/0.00
O-P-Od −11.8/7.8 2.3/1.9 1.4/1.3 −0.1/0.0
P-ONu e −0.40/−0.04 0.14/0.02 0.07/0.02 −0.03/0.01
Transition states P-OLg f −0.33/0.18 0.15/0.08 0.10/0.05 0.03/0.04
P-O g 0.07 0.02 0.02 0.00
O-P-Oh 11.5/6.5 2.9/2.5 2.0/1.9 0.0/−0.2
a)

The reference structures are optimized at the B3LYP/6-31+G(d,p) level. Bond distances are in Å and bond angles are in degrees.

b)

The errors are defined in the same manner as in Table 3.

c)

The number before the slash is the overall performance; the number after the slash excludes one extreme deviation from int1_2 of DMP.

d)

The number before the slash is the overall performance; the number after the slash excludes one extreme deviation from int1 of DMP.

e)

The distance between P and the nucleophilic oxygen (“ONu”); the number before the slash is the overall performance; the number after the slash excludes extreme deviations from ts1_2 and ts1_da of MMP.

f)

The distance between P and the key oxygen in the leaving group (“OLg”); the number before the slash is the overall performance; the number after the slash excludes one extreme deviation from ts2 and ts1_da of MMP.

g)

The distances between P and oxygen atoms not involved in the nucleophilic attack or the leaving group.

h)

The number before the slash is the overall performance; the number after the slash excludes one extreme deviation from ts1_2 of MMP.