TABLE 2.
Liver microarray data: LD
| Gene Name | Gene Description | Accession Number | Ratioa | qRT-PCR | P |
|---|---|---|---|---|---|
| BA synthesis, transport, and metabolism | |||||
| Cyp7a1 | Cholesterol 7α-hydroxylase | NM_007824 | 0.21 | 0.43 | * |
| Cyp27a1 | Sterol 27-hydroxylase | NM_024264 | 0.97 | 1.03 | |
| Cyp8b1 | Sterol 12α-hydroxylase | NM_010012 | 0.27 | 0.14 | |
| Bsep/Abcb11 | Bile salt export pump | NM_021022 | 1.80 | 1.01 | |
| Ntcp | Na+-taurocholate cotransporting protein | NM_011387 | 1.20 | 0.85 | |
| Oatp4 | Organic anion transporter, 1b2 | NM_178235 | 1.60 | 1.14 | |
| Oatp2 | Organic anion transporter, 1a4 | NM_030687 | 2.00 | 1.51 | * |
| Ostb | Organic solute transporter β | NM_178933 | 2.00 | 2.49 | ** |
| Mdr3/Abcb4 | ATP binding cassette, B4 | NM_008830 | 2.80 | 1.41 | * |
| Mrp2/Abcc2 | ATP binding cassette, C2 | NM_013806 | 1.30 | 0.92 | |
| Cyp2b10 | Cytochrome P450, 2b10 | NM_009998 | 0.82 | ||
| Cyp3a11 | Cytochrome P450, 3a11 | NM_007818 | 3.00 | ||
| Cholesterol synthesis, esterification, and transport | |||||
| Hmgcr | HMG-CoA reductase | NM_008255 | 1.60 | 1.53 | * |
| Abca1 | ATP binding cassette, A1 | NM_013454 | 1.80 | 1.28 | * |
| Abcg5 | ATP binding cassette, G5 | NM_031884 | 1.90 | 1.07 | |
| Abcg8 | ATP binding cassette, G8 | NM_026180 | 1.20 | 1.31 | |
| Abcg1 | ATP binding cassette, G1 | NM_009593 | 0.70 | 0.50 | ** |
| Acat1 | Acetyl-CoA acetyltransferase 1 | NM_009230 | 0.43 | 0.29 | ** |
| Acat2 | Acetyl-CoA acetyltransferase 2 | NM_146064 | 1.25 | 1.42 | |
| Cd36 | FA translocase | NM_007643 | 0.85 | 0.84 | |
| Srb1 | Scavenger receptor class, B1 | NM_016741 | 1.20 | 0.83 | |
| Scp2 | Sterol carrier protein 2, liver | NM_011327 | 1.29 | 0.93 | |
| CAV1 | Caveolin 1 | NM_007616 | 1.00 | ||
| NPC1 | Niemann pick type C1 | NM_008720 | 1.27 | ||
| StarD4 | StAR-related lipid transfer domain containing 4 | NM_133774 | 2.00 | 1.48 | |
| Transcription factors or nuclear receptors | |||||
| Lxrα | Liver X receptor | NM_013839 | 1.00 | 0.77 | |
| Fxr | Farnesoid X receptor | NM_009108 | 1.50 | 0.95 | |
| Shp | Small heterodimer partner | NM_011850 | 1.60 | 1.28 | |
| Pparα | Peroxisome proliferator activated receptor α | NM_011144 | 1.60 | 1.54 | * |
| Srebp1 | Sterol regulatory element binding protein 1 | NM_011480 | 2.50 | 2.36 | * |
| Srebp2 | Sterol regulatory element binding protein 2 | NM_033218 | 0.90 | 0.86 | |
| Rxr | Retinoid X receptor, α | NM_011305 | 1.60 | 1.14 | |
| FgfR4 | Fibroblast growth factor receptor 4 | AF127140 | 1.10 | 1.11 | |
| Hnf4a | Hepatic nuclear factor 4, α | NM_008261 | 1.50 | 1.03 | |
| FA synthesis and oxidation | |||||
| Fasn | Fatty acid synthase | NM_007988 | 5.40 | 3.80 | * |
| Ucp2 | Uncoupling protein 2 | NM_011671 | 0.83 | ||
| Scd1 | Stearoyl-CoA desaturase 1 | NM_009127 | 3.40 | 0.93 | |
| Scd2 | Stearoyl-CoA desaturase 2 | NM_009128 | 0.80 | ||
| Acaa1 | Acetyl-CoAacyltransferase 1 | NM_130864 | 2.19 | 5.62 | * |
| Acadl | Acyl-CoA dehydrogenase, long chain | NM_007381 | 2.13 | 1.61 | |
| Acot1 | Acyl-CoA thioesterase 1 | NM_012006 | 9.33 | 4.85 | ** |
| Lipoprotein metabolism | |||||
| apoB | Apolipoprotein B | XM_137955 | 1.13 | ||
| apoA4 | Apolipoprotein A-IV | NM_007468 | 2.00 | 1.94 | * |
| apoC3 | Apolipoprotein C-III | NM_023114 | 1.80 | ||
| apoC2 | Apolipoprotein C-II | NM_009695 | 1.90 | ||
| Ldlr | LDL receptor | NM_010700 | 1.40 | 1.70 | |
| Vldlr | VLDL receptor | NM_013703 | 1.60 | 1.30 | |
| ApoA1 | Apolipoprotein A | NM_009692 | 1.70 | 1.12 | |
| apoE | Apolipoprotein E | NM_009696 | 1.70 | 0.92 | |
| apoA5 | Apolipoprotein A-V | NM_080434 | 1.30 | 1.93 | |
| Mttp | Microsomal TG transfer protein | NM_008624 | 1.40 | 2.06 | ** |
| others | |||||
| Cyp4a14 | Cytochrome P450, 4A14 | NM_007822 | 34.40 | 26.55 | ** |
Relative expression of some genes was confirmed by real time qRT-PCR by individual samples (four mice per group). qRT-PCR results were expressed as a fold change normalized to the wild-type control. *P < 0.05; **P < 0.01.
Microarray data are expressed as an expression ratio of L-Fabp−/− versus the wild type.