Table 3.
The high frequency cis-elements of OsHsf genes
| Cis-elements |
HsfA |
T1 |
HsfB |
HsfC |
T2 | Descriptions | ||||||||||||||||||||||
| 1a | 2a | 2b | 2c | 2d | 2e | 3 | 4a | 4d | 5 | 6 | 7 | 9 | 1 | 2a | 2b | 2c | 4a | 4 | 4c | 4d | 1a | 1b | 2a | 2b | ||||
| Skn-1 and GCN4-motif | 2 | 2 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 4 | 15 | 1 | 1 | 3 | 0 | 0 | 3 | 0 | 2 | 1 | 4 | 2 | 0 | 17 | Required for endosperm expression |
| CCGTCC and CAT-box | 2 | 1 | 2 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 3 | 0 | 14 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 2 | 0 | 1 | 6 | Related to meristem expression |
| G-box and Sp1 | 5 | 8 | 17 | 12 | 3 | 6 | 14 | 7 | 3 | 3 | 17 | 6 | 5 | 106 | 10 | 7 | 2 | 10 | 7 | 5 | 7 | 7 | 13 | 8 | 7 | 19 | 102 | Involved in light response |
| HSE | 0 | 3 | 1 | 2 | 2 | 2 | 0 | 1 | 0 | 0 | 2 | 1 | 0 | 14 | 3 | 1 | 2 | 1 | 0 | 1 | 1 | 0 | 2 | 0 | 1 | 1 | 13 | Involved in heat stress response |
| LTR | 0 | 2 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 7 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | Involved in low-temperature response |
| ARE and GC-motif | 2 | 5 | 4 | 3 | 2 | 1 | 4 | 1 | 1 | 2 | 5 | 3 | 0 | 33 | 4 | 1 | 1 | 2 | 1 | 0 | 3 | 0 | 1 | 2 | 0 | 3 | 18 | Involved in the anaerobic induction |
| MBS and CCAAT-box | 1 | 1 | 0 | 1 | 2 | 1 | 0 | 2 | 1 | 1 | 3 | 2 | 1 | 16 | 1 | 1 | 1 | 2 | 3 | 2 | 1 | 3 | 1 | 1 | 0 | 1 | 17 | MYB binding site, involved in drought-inducibility |
| ABRE | 0 | 1 | 3 | 4 | 2 | 3 | 8 | 0 | 1 | 0 | 14 | 0 | 1 | 37 | 0 | 2 | 0 | 5 | 11 | 3 | 0 | 5 | 5 | 2 | 1 | 3 | 37 | Involved in the abscisic acid response |
| CGTCA-motif | 0 | 2 | 0 | 0 | 1 | 2 | 4 | 4 | 0 | 0 | 1 | 0 | 4 | 18 | 1 | 3 | 0 | 0 | 0 | 2 | 1 | 0 | 2 | 2 | 2 | 0 | 13 | Involved in the MeJA-response |
T 1: total number of each cis-element in HsfA; T 2: total number of each cis-element in HsfB and HsfC