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. 2009 Apr;181(4):1369–1385. doi: 10.1534/genetics.108.090852

TABLE 1.

Male gametophytic mutants grouped by phenotypic category

SGT name Line name Annotation and/or female gametophytic defect Insertion sitea and Ds orientationb TE (KanR/KanS)
AGI ID Self Male Female
Pollen development defective (PDD)
SGT 08397 pdd1 At3g10490c Arabidopsis NAC domain protein, ANAC051, ANAC052 141 bp upstream 1.1 0.0 0.9
SGT 07406 pdd2 At2g01820c LRR kinase 12 bp upstream 0.7 0.0 0.8
SGT 09930 pdd3 At5g63890 Histidinol dehydrogenase (At HDH) 145 bp upstream; 5′–3′ 0.7 0.0 0.6
SGT 14109 pdd4 At4g13890c Serine hydroxymethyltransferase 5 (SHM5), EDA37 Exon 2 0.2 0.0 0.4
SGT 01712 pdd5 At2g34880c Transcription factor jumonji (jmj), MEE27 381 bp upstream 0.2 0.0 0.3
SGT 03118 pdd6 At2g35210 ARF-GAP-like (At AGD10), MEE28 Exon 3; 5′–3′ 0.1 0.0 0.3
SGT 05238 pdd7 At2g34830/35c Intergenic, 2.6 kb upstream of At2g34835 and 2.5 kb upstream of At2g34830 0.2 0.0 0.3
SGT 01706 pdd8 Unannotated Upstream small ORF, 53 aa (ath_mu_ch2_12997 bottom) Intergenic, 1.2 kb upstream of At2g34850 and 1.3 kb upstream of At2g34860; 5′–3′ 0.2 0.0 0.3
SGT 02837 pdd9 At2g34920c Protein binding/zinc ion binding, EDA18 Exon 4 0.3 0.0 0.3
SGT 04915 pdd10 At2g37690c Phosphoribosylaminoimidazole carboxylase 33 bp upstream 0.1 0.0 0.3
SGT 04025 pdd11 At2g35060/70c Intergenic, 2.8-kb At2g35060 and 2.5 kb upstream of At2g35070 0.6 0.0 0.4
SGT 02824 pdd12 At2g34220 Unknown protein, MEE20 Exon 3; 5′–3′ 0.2 0.0 0.3
SGT 00458 pdd13 At4g04040–At4g04870 MEE51 525 kb deletion; 5′–3′ 0.3 0.0 0.1
SGT 01526 pdd14 At3g10000/At2g34850/60 Translocation 0.2 0.0 0.2
SGT 14667 pdd15 At5g44700–At5g44760 EDA23 26-kb deletion; 5′–3′ 0.2 0.0 0.1
SGT 08841 pdd16 At2g01200c AUX/IAA family protein, IAA32, MEE10 Exon 1 0.6 0.1 0.9
SGT 03904 pdd17 At4g14790 RNA helicase (At SUV3) 108 bp upstream; 3′–5′ 0.5 0.1 0.4
SGT 09368 pdd18 At1g60870c Expressed protein, MEE 9 44 bp downstream 0.5 0.4 0.4
SGT 06608 pdd19 At1g79860–At1g80740 MEE64 300-kb deletion; 5′–3′ 0.5 0.4 0.5
SGT 06991 pdd20 At5g58230 MSI1, MEE70 Exon 1; 5′–3′ 0.9 0.4 0.0
SGT 13017 pdd21 At3g10405c Unknown protein 190 bp upstream 0.5 0.0 0.5
SGT 08584 pdd22 At4g00700–At4g00910 100-kb deletion; 3′–5′ 0.6 0.0 0.8
SGT 06569 pdd23 At3g56200c Polyamine transporter Exon 1 1.5 0.0 1.1
SGT 02152 pdd24 At3g10960/70c Intergenic, 2.2 kb downstream of At3g10970 and 3.9 kb upstream of At3g10960 0.6 0.0 0.5
SGT 02381 pdd25 At4g00330 Calmodulin-binding receptor-like kinase (CRCK2) Exon 1; 5′–3′ 1.0 0.0 0.8
SGT 03906 pdd26 At4g14790 RNA helicase (AtSUV3) 130 bp upstream; 3′–5′ 0.6 0.0 0.7
SGT 13701 pdd27 At4g01530/At2g47470 Translocation 1.0 0.1 1.0
SGT 03135 pdd28 At2g34850/60c Intergenic, 1.1 kb upstream of At2g34860 and 1.2 kb upstream of At2g34850 1.0 0.2 0.7
SGT 11685 pdd29 At4g36170/At2g01420 Translocation 1.0 0.3 1.0
SGT 04228 pdd30 Unannotated Upstream small ORF, 106 aa; GenBank EST EG515492 Intergenic, 2 kb upstream of At1g26810 and 1.3 kb downstream of At1g26820; 3′–5′ 1.5 0.3 0.8
SGT 04087 pdd31 At2g34825/At2g34830 AtWRKY35 476 bp downstream of At2g34830 and 1.8 kb downstream of At2g34825; 3′–5′ 0.2 0.0 0.4
SGT 12162 pdd32 At3g63290c Unknown protein Exon 1 1.0 0.2 0.3
SGT 14110 pdd33 At4g13890/At2g01200 EDA36 Translocation 0.4 0.0 0.6
SGT 09926 pdd34 At5g54740c Lipid transfer protein (LTP) 330 bp upstream 1.3 0.3 1.0
Pollen germination defective (PGD)
SGT 08289 pgd2 At3g10620–At3g11270 200-kb deletion; 5′–3′ 0.9 0.0 1.0
SGT 07358 pgd3 At3g10560c Cytochrome P450 (CYP77A7),UNE9 Exon 0.4 0.0 0.6
SGT 03671 pgd4 At2g35070 Unknown protein Intron 1; 5′–3′ 0.1 0.0 0.3
SGT 03669 pgd5 At2g34090c Unknown protein, MEE18 71 bp upstream 0.2 0.0 0.3
SGT 01084 pgd6 At4g05450 Adrenodoxin-like ferredoxin 2 315 bp upstream; 5′–3′ 0.3 0.1 0.1
SGT 03063 pgd7 At2g35300 LEA group 1 domain protein 70 bp downstream; 3′–5′ 1.2 0.0 0.9
SGT 01001 pgd8 At3g05770 Unknown protein Intron 1; 5′–3′ 0.7 0.1 1.0
SGT 11239 pgd9 At3g10405–At3g10116 110-kb deletion; 3′–5′ 0.7 0.0 0.7
Pollen tube growth defective (TGD)
SGT 01850 tgd1 At3g03810c Unknown protein, EDA30 141 bp downstream 0.3 0.0 0.2
SGT 04586 tgd2 At2g34850c Intergenic, 426 bp downstream of At2g34850 0.7 0.4 0.4
SGT 07405 tgd3 At3g07330c Cellulose synthase-like C6 (ATCSLC6) Exon 1 1.5 0.5 0.7
SGT 03295 tgd4 At2g12945/At5G54745 Translocation 1.1 0.6 0.4
SGT 05752 tgd5 At1g77131 Pseudogene of PGSIP, glycogenin glycosyltransferase 754 bp upstream of At1g77130; 3′–5′ 1.0 0.0 1.0
SGT 13609 tgd6 Unannotated Downstream small ORF, 53 aa Intergenic, 1.8 kb downstream of At4g11550 and 2.3 kb upstream of At4g11540; 3′–5′ 1.2 0.4 0.9
SGT 11205 tgd7 At3g06530/At3g06540 Intergenic, 771 bp downstream of At3g06540 and 750 bp downstream; 3′–5′ 1.3 0.1 1.0
SGT 02510 tgd8 At3g05000 Transport protein particle (TRAPP) component, Bet3 family protein Exon 1; 5′–3′ 1.0 0.3 1.0
SGT 09403 tgd9 At3g59760c O-acetylserine (thiol) lyase isoform C (OASC) Exon 1 1.2 0.6 0.9
SGT 11437 tgd10 At3g06430 Pentatricopeptide repeat protein, EMB2750 Exon 1; 5′–3′ 1.1 0.6 0.4
SGT 01267 tgd11 At3g03650c Exostosin family protein, EDA5 Exon 1 0.2 0.0 0.6
SGT 00656 tgd12 At3g03690c Glycosyl transferase family 14, UNE7 Intron 1 0.2 0.0 0.2
SGT 15318 tgd13 At3g10280–At3g10915 235-kb deletion; 3′–5′ 0.3 0.0 0.2
SGT 08149 tgd14 At1g25240/At1g25250 Intergenic, 1.5 kb upstream of At1g25250 and 1.2 kb downstream; 5′–3′ 1.2 0.2 1.0
SGT 04229 tgd15 At2g34590c Transketolase family protein; similar to Pyruvate dehydrogenase E1 beta (PDH-E1 BETA) 66 bp upstream 1.4 0.3 0.8
SGT 15447 tgd16 At2g47510 Fumarase (FUM1) Exon 1; 3′–5′ 1.0 0.5 0.8
SGT 07020 tgd17 At1g25450c Very-long-chain fatty acid condensing enzyme (CUT1) Exon 1 0.6 0.2 0.2
SGT 07170 tgd18 At2g47470 UNE5 400 bp upstream of At2g47470; 5′–3′ 1.2 0.4 0.6
SGT 14828 tgd19 At3g05200–At3g05320 30-kb deletion; 5′–3′ 1.0 0.0 0.9
Pollen tube–embryo sac interaction (PEI) and fertilization defective
SGT 05178 pei1 At3g58350/At2g34850 Translocation 0.7 0.1 0.6
SGT 12231 pei2 At3g14940/At3g14950 Intergenic, 366 bp downstream of At3g14940 and 346 bp downstream of At3g14950; 5′–3′ 1.3 0.4 0.9
No obvious phenotype
SGT 11748 At1g04620/30/ At2g34850/60 Translocation 0.3 0.4 0.1
SGT 12347 At2g15890c Unknown protein, MEE14 Exon 1 0.5 0.4 0.1
SGT 01214 At3g14920–At3g15030 MEE35 44-kb deletion; 5′–3′ 0.5 0.4 0.1

The genetrap (SGT) number is indicated. The annotation is according to TAIR. Transmission efficiency (TE) (KanR/KanS) is shown from self and reciprocal crosses. The female gametophyte phenotype noted by Pagnussat et al. (2005) is indicated, if present. AGI ID, Arabidopsis Genome Initiative identification number.

a

The insertion location relative to the transcribed region of the annotated gene.

b

Orientation of the Ds insertion relative to the transcribed region of the annotated gene (shown only for insertions where both flanking sequences were recovered and map to the same chromosome). For lines in which the distance from the closest ORF is >1 kb upstream or 0.3 kb downstream, the genomic coordinate of the Ds insertion is indicated.

c

Lines for which only one genomic flanking sequence was recovered.