. 2009 Apr;181(4):1427–1436. doi: 10.1534/genetics.108.095018

TABLE 3.

Genetic markers

Marker name	Type	Primers^a	Coordinates^b
DBarX111	2 (Rbm10)	GTCCTGAAAGGCCCGTGT	20212996–20214673
		GAACCAAAGGCCAAAACTGA
DBarX 51	1	GGAGGCTTAGCTTACCCCTTT	40781605–40782207
		ACGTGAAATTGTGTGCGTGT
DBarX 52	1	CACATGAGCTCTGTTGCATCT	53759564–53760159
		AAAGTCACCCTCATGGGAAG
DBarX 112	2 (Bgn)	GACCACAACAAAATCCAGGC^a	70738334–70738684
		CTCTCACCTGGAGGAGCTTG^a
DBarX 113	2 (Tbl1x)	GGACGCTCACACAGGAGAAG^a	74895226–74895824
		GTCCTTGGAAGGTTTTGACTG^a
DBarX 114	2 (CNS)	CCAGCTTTGGTCATTTGACAG^a	84947982–84948629
		AGGGACTTGGAAAGCTCACA^a
DBarX 53	1	AAGGCAATGGCTTCATTGTT	129415830–12941667
		TGCTTCTGACCTTTGAGCAG
DBarX 54	1	CCACCTCTGTGAGCACATTC	131291877–131292275
		TGTCTAAATGTGTTTCTCACACTCC
DBarX 55	1	ATGCACCCCTCCAGTTCTGC	136812895–136813493
		TGGATCTGCAGTAATGTGCAGT
DBarX 56	1	GAGCGTCCCGGGAGCTCCTT	147389767–147390410
		CCACCTCTTACAGGAAGCC
DBarX 115^c	2 (CNS)	ATTGCCTGCCAAATCACACT^a	156649400–156649723
		TGATTAAGTGACCCCAGAAATC^a
DBarX 57	1	TCCATTGTTATTCAAGGAAGGAA	158286467–158286797
		GCTTTTGTGCAGATTCCCAG
DBarX 119^c	2 (CNS)	AGGTGATGTCAGCGGCTCT^a	158595286–158595666
		TCTTTCCAGAACTCATCCCC^a
DBarX 116	2 (CNS)	GTCGATTAGCATTGGCATTT^a	162665068–162665558
		AAAGCATAGCACACACAAGGA^a
DBarX 118^c	2 (Prps2)	GCTCATTGGTCAGCCAATCT	163801537–163803099
		CCATGTGCTTTGTGATTCCA
DBarX 117	2 (CNS)	GAACAGCAAGGAGGAAATTG^a	164867514–164867994
		CCTGAAGCCTCCCACTCC^a

Marker names correspond to those in Figures 2 and 3; types “1” and “2” refer to SSLP and SNP markers, respectively, the latter followed either by the gene name or conserved noncoding sequence (CNS) depending on how the primers were derived. Oligonucleotide primers were originally designed from mouse genome sequence, but unless otherwise stated (see footnote a), new primers were generated from the amplified hamster sequence and used for subsequent genotyping.

All of the type 1 (SSLP) primers represent hamster sequence. However, for seven of the nine type 2 (SNP) primers (those indicated with a superscript a), oligonucleotides based on the mouse sequence yielded robust products when amplifying hamster genomic DNA, and we did not redesign new hamster primers.

Physical position of amplicons on the mouse X chromosome based on coordinates from the July 2007 (build 37) release.

Not included in Figures 2 and 3 because they added no new map information. Genotypes from DXBar115 and DXBar119 were identical to those obtained with DXBar57; genotypes from DXBar118 were identical to those obtained with DXBar117.