Table 3.
Percentage of repeated base pairs within IHRs.
| IHR1 | IHR2 | ||||
| Observed | Expected | Observed | Expected | ||
| Percentage of IHRs containing repeat (%) | 43 (0.001) | 74 | 97 (0.948) | 94 | |
| Average percentage of repeated base pairs (%) | SINE | 4.26 (0.001) | 16.76 | 11.00 (0.001) | 13.51 |
| LINE | 2.37 (0.001) | 26.63 | 13.42 (0.001) | 20.96 | |
| LTR | 0.60 (0.001) | 10.81 | 4.67 (0.001) | 8.53 | |
| Low_complexity | 4.86 (1) | 0.73 | 0.72 (0.984) | 0.58 | |
| scRNA | 0 (0.001) | 0.005 | 0.006 (0.783) | 0.004 | |
| DNA | 0.75 (0.001) | 3.88 | 2.78 (0.146) | 3.06 | |
| RNA | 0.03 (0.967) | 0.005 | 0.001 (0.404) | 0.005 | |
| srpRNA | 0 (0.001) | 0.008 | 0.0008 (0.110) | 0.008 | |
| snRNA | 0 (0.001) | 0.02 | 0.01 (0.716) | 0.01 | |
| tRNA | 0 (0.001) | 0.003 | 0.0009(0.219) | 0.003 | |
| rRNA | 0 (0.001) | 0.007 | 0.005(0.635) | 0.006 | |
| Simple_repeat | 1.04 (0.476) | 1.17 | 1.02 (0.828) | 0.92 | |
| Satellite | 0 (0.001) | 0.49 | 0 (0.001) | 0.36 | |
Randomly selected human genomic regions were used to test the significance, the fraction of times in which the random sample set scored lower average scores than those of the IHRs provided the basis for the statistical significance. p value was given in the bracket.