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. Author manuscript; available in PMC: 2010 Apr 25.
Published in final edited form as: Virology. 2009 Feb 27;387(1):16–28. doi: 10.1016/j.virol.2009.01.041

TABLE 1.

Summary properties of SIV-derived Mamu-A*01 peptides

SIV Gene Peptide name Amino Acid Sequence Reference MFI % IFN-γ CD8+ T cells
Gag LA9 LAPVPIPFA (Allen et al., 2001) 23.4 9.52
Gag CM9 CTPYDINQM (Allen et al., 1998) 34.4 67.25
Gag LW9 LSPRTLNAW (Allen et al., 2001) 1.72 7.81
Pol LV10 LGPHYTPKIV (Allen et al., 2001) 1.58 4.02
Pol SV9 STPPLVRLV (Egan et al., 1999) 45.8 10.1
Pol GM10 GSPAIFQYTM (Allen et al., 2001) 9.06 2.51
Pol MI8 MTPAERLI (Allen et al., 2001) 11.2 4.65

Seven previously defined Mamu-A*01 restricted SIV Gag and Pol epitopes were tested for stabilization of cell surface expression of Mamu-A*01/Kb in RMA-S cells, and induction of intracellular IFN-γ production in CD8+ T cells after IVS of rVV-SIVGag-Pol immunized Mamu-A*01/Kb Tg mice (N=2) for each peptide. Background binding to a control peptide was subtracted for RMA-S assays, and the percentage of IFN-γ+ CD8+ T cells from a mock-stimulated culture was subtracted from all ICC assay results. The mean fluorescence intensity (MFI) and percentage of intracellular IFN-γ positive of CD8+ T cells were determined by flow cytometry using a FACS-Canto (BDIS, San Jose, CA). Results shown are an average of N=2 mice with <25% standard error from the mean.