Table 6.
Summary of Association Results in GWAS and Replication Studies
SNP | US White GWAS Sample p Value | US White Family Sample p Value | Framingham Sample (White) p Value | Chinese HF Sample p Value | Chinese BMD Sample p Value | Tobago BMD Sample (African) p Value |
---|---|---|---|---|---|---|
ADAMTS18rs16945612 | Hip BMD/female sample:5.75 × 10−7 (allele)4.61 × 10−4 (haplotype) | Hip BMD:1.6 × 10−2Spine BMD:3.5 × 10−3 | Hip BMD: 6 × 10−3 | Hip fracture: 1.9 × 10−2 | Hip BMD:9 × 10−3 Spine BMD: 1 × 10−2 | Hip BMD: 1.7 × 10−1 Trochanter BMD: 3.2 × 10−2 |
ADAMTS18rs11859065 | Hip BMD/female sample:1.28 × 10−6 (allele)4.91 × 10−4 (haplotype) | Hip BMD:1.65 × 10−2 Spine BMD: 3.5 × 10−3 | Hip BMD: 5.5 × 10−3 | Hip fracture: 1.9 × 10−2 | Hip BMD:9 × 10−3 Spine BMD: 1 × 10−2 | NAa |
ADAMTS18rs11864477 | Hip BMD/female sample:4.17 × 10−7 (allele)2.90 × 10−5 (haplotype) | Hip BMD:1.65 × 10−2 Spine BMD: 3.5 × 10−3 | Hip BMD: 6.5 × 10−3 | Hip fracture: 1.9 × 10−2 | Hip BMD:9 × 10−3 Spine BMD: 1 × 10−2 | NAa |
ADAMTS18rs11860781 | Hip BMD/female sample:2.03 × 10−6 (allele)5.78 × 10−4 (haplotype) | Hip BMD: 1 × 10−2 | Hip BMD: 1.0 × 10−2 | Hip fracture: 1.7 × 10−1 | Hip BMD: 1 × 10−1 | NAa |
TGFBR3rs17131547 | Spine BMD/total sample:3.91 × 10−4 (allele)3.47 × 10−8 (haplotype) | Spine BMD: 1 × 10−2 | Spine BMD: 3 × 10−2 | NAb | NAb | Spine BMD: 6.7 × 10−3 Total body BMD: 3.1 × 10−2 |
Hip BMD: 1.1 × 10−3 | ||||||
Femoral Neck BMD: 5.4 × 10−3 | ||||||
Intertrochanter BMD: 4.93 × 10−4 | ||||||
Trochanter BMD: 1.3 × 10−2 | ||||||
Ward's triangle BMD: 2.82 × 10−4 |
rs11859065, rs11864477 and rs11860781 was not genotyped in Tobago sample considering the redundancy in genotyping since they are all in strong LD with rs16945612 in the HapMap African sample.
rs17131547 was monomorphic in Chinese.