Table 4.
Table of Hub Transcripts in the eQTL and DE Network
| Cluster | Probe ID | Name | Entrez | No. Links |
|---|---|---|---|---|
| 2 | GI_37620215-S | LOC253827 | 253827 | 134 |
| 4 | GI_21314672-S | CLST11240 | 51751 | 134 |
| 2 | GI_34577082-A | RSU1 | 6251 | 136 |
| 4 | GI_4505876-A | PLEC1 | 5339 | 136 |
| 7 | GI_29740938-S | KIAA1136 | 57512 | 136 |
| 7 | GI_4504482-S | HPRT1 | 3251 | 136 |
| 8 | GI_4505718-S | PEX11B | 8799 | 136 |
| 7 | GI_4503064-S | CRYM | 1428 | 137 |
| 2 | GI_21389426-S | MGC29891 | 126626 | 138 |
| 4 | GI_34577104-A | RNPC1 | 55544 | 138 |
| 4 | GI_4758085-S | CSRP1 | 1465 | 138 |
| 7 | GI_27734858-S | LOC285533 | 285533 | 139 |
| 7 | GI_37221176-S | NUDT11 | 55190 | 139 |
| 3 | GI_34222376-S | MGC44287 | 340547 | 142 |
| 4 | GI_41152085-S | SERPINB6 | 5269 | 142 |
| 4 | GI_4508040-S | ZNF91 | 7644 | 142 |
| 7 | GI_21264573-S | TM4SF13 | 27075 | 143 |
| 4 | GI_13899238-S | MGC10812 | 54858 | 144 |
| 3 | GI_37538660-S | IPLA2(GAMMA) | 50640 | 146 |
| 4 | GI_27754195-S | MTND3 | 4537 | 146 |
| 4 | GI_31982916-S | FLJ23042 | 5829 | 146 |
| 4 | GI_34147573-S | ITGB5 | 3693 | 146 |
| 4 | GI_8922566-S | FLJ10647 | 55194 | 146 |
| 4 | GI_31543199-S | C7orf21 | 83590 | 147 |
| 2 | GI_33589825-S | APG10L | 819941 | 148 |
| 3 | GI_31543151-S | MGC14817 | 84298 | 148 |
| 4 | GI_38569399-S | ITPKB | 3707 | 148 |
| 4 | GI_4755133-S | DOK1 | 1796 | 149 |
| 4 | GI_6005923-S | TU3A | 11170 | 149 |
| 1 | GI_37550007-S | KIAA0121 | 9686 | 150 |
| 3 | GI_41393596-S | CSAD | 51380 | 150 |
| 1 | GI_38788287-S | ZNF160 | 90338 | 151 |
| 4 | GI_19923329-S | CTDSP2 | 10106 | 151 |
| 1 | GI_28558992-I | TG737 | 8100 | 153 |
| 4 | GI_24308106-S | DKFZp566C0424 | 26099 | 153 |
| 7 | GI_21361148-S | RGS7 | 6000 | 155 |
| 4 | GI_38176295-I | LASS1 | 10715 | 156 |
| 8 | GI_34335244-A | NMNAT2 | 23057 | 156 |
| 4 | GI_11968040-S | DCLRE1C | 64421 | 158 |
| 4 | GI_30795118-A | FBXO18 | 84893 | 159 |
| 8 | GI_19913427-S | ATP6V1B2 | 526 | 159 |
| 1 | GI_8922963-S | SYNJ2BP | 55333 | 163 |
| 4 | GI_13376551-S | FLJ14346 | 80097 | 163 |
| 4 | GI_24308252-S | DTX2 | 113878 | 163 |
| 4 | GI_25453471-A | EEF1D | 1936 | 164 |
| 4 | GI_4755141-S | INPPL1 | 3636 | 168 |
| 2 | GI_14249467-I | C6orf29 | 80736 | 171 |
| 1 | GI_14249445-S | FLJ14431 | 84869 | 175 |
| 8 | GI_23111022-S | SNX10 | 29887 | 177 |
| 8 | GI_10863934-S | RTN1 | 6252 | 178 |
| 4 | GI_19923612-S | FLJ21128 | 80153 | 179 |
| 3 | GI_42655861-S | KIAA0492 | 57238 | 180 |
| 4 | GI_19913359-S | TBL1X | 6907 | 180 |
| 4 | GI_5803097-S | MYST3 | 7994 | 182 |
| 8 | GI_31542527-S | DKFZP566B183 | 25977 | 186 |
| 1 | GI_36030972-S | UBXD4 | 165324 | 188 |
| 4 | GI_38569463-S | SASH1 | 23328 | 195 |
| 8 | GI_20357538-A | ATP6V1G2 | 534 | 202 |
| 8 | GI_5454069-S | SLC9A6 | 10479 | 202 |
| 4 | GI_28558997-A | PTBP1 | 5725 | 209 |
| 8 | GI_45238856-S | LOC114928 | 114928 | 214 |
| 4 | GI_27478393-S | LOC285919 | 285919 | 230 |
Listed are all of the transcripts with greater than 134 links (see Supplemental Data). Transcripts correlated with SNP genotype are highlighted in bold. Cluster number (cluster), probe number from the Illumina RefSeq-8 chip (Probe ID), transcript name from the Illumina RefSeq-8 chip (Name), Entrez gene identity number (Entrez), and the number of transcripts linked to the target (No. Links) are given. All eQTL transcripts highlighted in bold have a significant diagnosis interaction (α = 0.05), have SNPs mapping in trans, and are differentially expressed between cases and controls (SAM FDR < 0.1%), with the exception of MGC10812, which met other the criteria but was not differentially expressed.