Table I.
Known PCs (15)
Association values were calculated as described under “Protein Complex Identification” and “Protein Complex Evaluation” under “Experimental Procedures.” Fractions denote the number of chromatography fractions in which the protein was identified. The protein annotation differs from that in the public NCBI annotation if the protein component is known (as indicated by the reference), has similarity to a known complex from a closely related organism (also referenced), or has a known InterPro domain (indicated within angle brackets). The operon number is taken from Ref. 32. PC-34 represents two known PCs, making the total sixteen.
| Complex number | Gene | Annotation | pI | Association value | Fractions | Operon number | Refs. |
|---|---|---|---|---|---|---|---|
| Control PCs | |||||||
| PC-33 | PF0891 | Hydrogenase I β | 6.3 | 0.40 | 100 | 200 | 41 |
| PF0892 | Hydrogenase I γ | 9.0 | 45 | 200 | |||
| PF0893 | Hydrogenase I δ | 5.2 | 39 | 200 | |||
| PF0894 | Hydrogenase I α | 5.7 | 51 | 200 | |||
| PC-34 | PF0965 | Pyruvate ferredoxin oxidoreductase β | 9.1 | 0.42 | 112 | 215 | 48 |
| PF0966 | Pyruvate ferredoxin oxidoreductase α | 5.0 | 151 | 215 | |||
| PF0967 | Pyruvate ferredoxin oxidoreductase δ | 5.2 | 100 | 215 | |||
| PF0968 | 2-Ketoisovalerate ferredoxin oxidoreductase β | 9.1 | 42 | 215 | 38 | ||
| PF0969 | 2-Ketoisovalerate ferredoxin oxidoreductase α | 5.3 | 62 | 215 | |||
| PF0970 | 2-Ketoisovalerate ferredoxin oxidoreductase δ | 5.5 | 64 | 215 | |||
| PF0971 | Pyruvate/2-ketovalerate ferredoxin oxidoreductase γ | 5.4 | 240 | 215 | |||
| PC-49 | PF1327 | FNOR I α | 7.1 | 0.46 | 65 | 307 | 36 |
| PF1328 | FNOR I β | 7.2 | 20 | 307 | |||
| Known PCs | |||||||
| PC-2 | PF0018 | DNA polymerase II small subunit | 5.0 | 0.20 | 22 | 4 | 49 |
| PF0019 | DNA polymerase II large subunit | 6.2 | 27 | 4 | |||
| PF0020 | 〈β-Lactamase-like (lactamase_B)〉 | 5.5 | 57 | 5 | |||
| PC-5 | PF0092 | Replication factor C, large subunit | 5.8 | 0.26 | 8 | 22 | 50 |
| PF0093 | Replication factor C, small subunit | 6.7 | 37 | 22 | |||
| PF0094 | Protein-disulfide oxidoreductase | 4.9 | 25 | 51 | |||
| PC-10 | PF0181 | 〈ATPase, V1/A1 complex, subunit F〉 | 5.2 | 0.11 | 2 | 44 | 52 |
| PF0182 | ATPase subunit A | 6.1 | 72 | 44 | |||
| PF0183 | ATPase subunit B | 5.3 | 106 | 44 | |||
| PF0184 | ATPase subunit D | 9.6 | 19 | 44 | |||
| PC-22 | PF0533 | Indolepyruvate oxidoreductase α | 6.8 | 0.80 | 64 | 118 | 53 |
| PF0534 | Indolepyruvate ferredoxin oxidoreductase β | 6.4 | 37 | 118 | |||
| PC-26 | PF0598 | Aspartate carbamoyltransferase, regulatory subunit | 7.8 | 0.39 | 40 | 135 | 54 |
| PF0599 | Aspartate carbamoyltransferase, catalytic subunit | 6.1 | 34 | 135 | |||
| PC-46 | PF1245 | Proline dehydrogenase α | 8.1 | 0.46 | 48 | 285 | 55 |
| PF1246 | Proline dehydrogenase β | 7.2 | 25 | 285 | |||
| PC-50 | PF1331 | Hydrogenase II δ | 5.9 | 0.44 | 20 | 308 | 56 |
| PF1332 | Hydrogenase II α | 5.0 | 62 | 308 | |||
| PC-56 | PF1433 | mbh11 membrane-bound hydrogenase β | 5.1 | 0.31 | 8 | 332 | 57 |
| PF1434 | mbh12 membrane-bound hydrogenase α | 6.6 | 26 | 332 | |||
| PC-62 | PF1562 | DNA-directed RNA polymerase subunit a | 5.7 | 0.21 | 15 | 360 | 58 |
| PF1563 | DNA-directed RNA polymerase subunit a` | 6.4 | 51 | 360 | |||
| PF1564 | DNA-directed RNA polymerase subunit b | 6.3 | 99 | 360 | |||
| PF1565 | DNA-directed RNA polymerase subunit h | 8.8 | 2 | 360 | |||
| PC-65 | PF1577 | Hypothetical protein PF1577 | 9.3 | 0.23 | 14 | 363 | |
| PF1578 | DNA topoisomerase VI subunit A | 8.4 | 4 | 363 | 59 | ||
| PF1579 | DNA topoisomerase VI subunit B | 8.8 | 3 | 363 | |||
| PC-68 | PF1642 | DNA-directed RNA polymerase subunit k | 9.5 | 0.23 | 5 | 378 | 58 |
| PF1643 | DNA-directed RNA polymerase subunit n | 6.1 | 13 | 379 | |||
| PC-106 | PF2018 | Replication protein A32 | 5.1 | 0.25 | 15 | 457 | 60 |
| PF2019 | Replication protein A14 | 4.9 | 3 | 457 | |||
| PF2020 | Replication protein A41 | 4.9 | 18 | 457 |