TABLE 2.
HIV-1 viral loads in DPS after RNA extraction with four different RNA extraction kits
Spiked plasma dilutiona (log10 copies/ml) | DPS extracted by QIAamp viral RNA mini kit (Qiagen)b
|
DPS extracted by Abbott sample preparation system
|
DPS extracted by Nuclisens manual extraction kit (bioMérieux)b
|
DPS extracted by High Pure viral nucleic acid kit (Roche)b
|
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---|---|---|---|---|---|---|---|---|---|---|---|---|
VL | Mean | Plasma − DPSc | VL | Mean | Plasma − DPSc | VL | Mean | Plasma − DPSc | VL | Mean | Plasma − DPSc | |
3.30 | — | 2.85 | 2.88 | 0.42 | — | 3.25 | 0.05 | — | ||||
2.68 | NA | 0.62 | 3.15 | 2.62 | — | |||||||
— | 2.77 | 3.57 | — | |||||||||
— | 2.76 | 3.56 | — | |||||||||
4.31 | 2.83 | 2.89 | 1.42 | 3.58 | 3.61 | 0.70 | 4.22 | 4.06 | 0.24 | — | ||
2.95 | 3.64 | 3.91 | 2.63 | NA | 1.68 | |||||||
5.32 | 3.88 | 3.82 | 1.50 | 4.54 | 4.58 | 0.74 | 5.39 | 5.33 | −0.01 | 3.47 | 3.28 | 2.04 |
3.98 | 4.48 | 4.95 | 3.71 | |||||||||
3.58 | 4.67 | 5.47 | 2.68 | |||||||||
3.84 | 4.64 | 5.51 | 3.25 |
DPS were prepared with three different dilutions of human HIV-negative plasma spiked with HIV-1 (Table 1) and were tested in duplicate, and the samples with the lowest and highest viral loads were tested twice in duplicate.
—, undetectable; NA, not applicable.
Difference in log10 copies/ml between the viral loads in plasma and DPS.