TABLE 1.
Bacterial strains and plasmids used in this study
Strain or plasmid | Description | Source or reference |
---|---|---|
Strains | ||
E. coli | ||
BL21(DE3) | F−ompT hsdSB(rB− mB−) gal dcm with DE3, a λ prophage carrying the T7 RNA polymerase gene | Novagen |
SMhisMrpC2 | BL21(DE3) containing pET16b/His10-MrpC2 | 35 |
SMFruAhis | BL21(DE3) containing pET11km/FruA-His6 | 35 |
EDYFruA | BL21(DE3) containing pET11a/FDBD-H8 | 68 |
M. xanthus | ||
DK1622 | Wild type | 17 |
DK4499 | Tn5 lac Ω4499 | 25 |
MSM1727.DZF1 | sglA1 attB::pREG1727 | This study |
MDY1727.FA | sglA1 fruA::TnV Ω786 attB::pREG1727 | 68 |
MSM4499.DZF1 | sglA1 attB::pDY52 | This study |
MSM4499.FA | sglA1 fruA::TnV Ω786 attB::pDY52 | This study |
Plasmids | ||
pET11a/FDBD-H8 | pET11a with a gene encoding FruA-DBD-His8 under the control of a T7 RNA polymerase promoter | 57 |
pET16b/His10-MrpC2 | pET16b with a gene encoding His10-MrpC2 under the control of a T7 RNA polymerase promoter | 39 |
pET11km/FruA-His6 | pET11km with a gene encoding FruA-His6 under the control of a T7 RNA polymerase promoter | S. Inouye |
pREG1727 | Apr Kmr P1-inc attP 'lacZ | 7 |
pDY52 | pREG1727 with 150-bp XhoI-BamHI fragment from pDY51 | 67 |
pDY100 | pGEM7Zf with fmgBC DNA from positions −218 to +50 | 67 |
pDY133 | pDY100 with a GCCGC-to-TAATA mutation at positions −81 to −77 | 67 |
pDY129 | pDY100 with a GGAC-to-TTCA mutation at positions −71 to −68 | 67 |
pDY127 | pDY100 with a ACCA-to-CAAC mutation at positions −67 to −64 | 67 |
pDY125 | pDY100 with a CCGG-to-AATT mutation at positions −63 to −60 | 67 |
pDY49 | pDY100 with a TCATTC-to-GACGGA mutation at positions −59 to −54 | 67 |
pDY121 | pDY100 with a CCTTC-to-AAGGA mutation at positions −53 to −49 | 67 |
pDY47 | pDY100 with a GAAC-to-TCCA mutation at positions −48 to −45 | 67 |
pDY117 | pDY100 with a C-to-A mutation at position −37 | 67 |
pDY45 | pDY100 with a CATTCCT-to-ACGGAAG mutation at positions −36 to 30 | 67 |