TABLE 2.

HP1248-induced genes^a

ORF no.	HP1248−/WTb ratio	Putative gene product,c gene
HP1177	0.48	Outer membrane protein, omp27
HP0606	0.49	Membrane fusion protein, mtrC
HP0229	0.25	Outer membrane protein, omp6
HP0298	0.48	Dipeptide ABC transporter, dppA
HP0299	0.44	Dipeptide ABC transporter, dppB
HP1340	0.40	Biopolymer transport protein, exbD
HP0687	0.46	Iron(II) transport protein, feoB
HP0514	0.49	Ribosomal protein L9, rpl9
HP0691	0.46	3-Oxoadipate CoA-transferase subunit A, yxjD
HP1302	0.49	Ribosomal protein S5, rps5
HP1300	0.25	Preprotein translocase subunit, secY
HP1256	0.48	Ribosome releasing factor, frr
HP0215	0.49	CDP-diglyceride synthetase, cdsA
HP1237	0.46	Carbamoyl-phosphate synthetase, pyrAa
HP0399	0.48	Ribosomal protein S1, rps1
HP1186	0.15	Carbonic anhydrase
HP1555	0.43	Translation elongation factor EF-Ts, tsf
HP0306	0.48	Glutamate-1-semialdehyde 2,1-aminomutase, hemL
HP0690	0.48	Acetyl CoA acetyltransferase (thiolase), fadA
HP1299	0.25	Methionine amino peptidase, map
HP1239	0.49	Hypothetical protein

^aGenes listed are those whose transcription differed less than half (ratio < 0.5) for the HP1248 deletion mutant H. pylori C1/HP1248-cat compared to that for the NTUH-C1 wild type, according to microarray analysis. ORF, open reading frame.

^bWT, wild type. HP1248−, HP1248 deletion mutant.

^cThe functional annotation is that used by the TIGR database (http://www.tigr.org). CoA, coenzyme A.