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. 2009 Mar 25;5(4):1106–1116. doi: 10.1021/ct800559d

Table 1. System Setup for MD Simulations of PVR Bound to the N1 Active Site (N1-PVR), Free in Water (wt-PVR), and in Vacuum (vc-PVR).

  N1-PVR wt-PVR vc-PVR
T [K] 300 300 300
no. Na+ ions 3 0 0
total system charge [e] 0 0 0
no. solute atoms 3863 30 30
no. water molecules 17046 1748 0
no. atoms in system 55004 5274 30