Table 1. System Setup for MD Simulations of PVR Bound to the N1 Active Site (N1-PVR), Free in Water (wt-PVR), and in Vacuum (vc-PVR).
| N1-PVR | wt-PVR | vc-PVR | |
|---|---|---|---|
| T [K] | 300 | 300 | 300 |
| no. Na+ ions | 3 | 0 | 0 |
| total system charge [e] | 0 | 0 | 0 |
| no. solute atoms | 3863 | 30 | 30 |
| no. water molecules | 17046 | 1748 | 0 |
| no. atoms in system | 55004 | 5274 | 30 |