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. 2008 Jul 25;139(2):193–208. doi: 10.1016/j.virusres.2008.06.008

Fig. 10.

Fig. 10

Solution structural characteristics of the refined PEMV-1 P1–P2 pseudoknot (PDB 2RP0). (A) Left: Global all atom superposition (residues 4–30) of 28 lowest energy models of the PEMV-1 pseudoknot (see Table 1 for structure statistics); right, ribbon representation of the same structure bundle color-coded as in Fig. 9. All-atom superposition above (B) and below (C) the helical junction of the PEMV-1 pseudoknot. Models of the BWYV (D), PLRV (E), PEMV (F) and ScYLV (G) pseudoknots emphasizing the structure of the minor-groove spanning L2 loop. The sequence (5′–3′) of L2 is also indicated below the figure.