Table 7.
The parameters of core promoter elements
Name | Consensusa | Length/Centerb | Windowc | Mismatch allowedd |
TATA box | TATAWAAR | 12/3 | -33 - -23 | 1 |
Initiator | TCAKTY | 12/3 | -1 – +9 | 1 |
DPE | RGWYV | 8/0 | +27 – +36 | 0 |
MTE | CSARCSSAAC | 10/0 | +17 – +26 | 2 |
a Motif consensus in NC-IUB nomenclature
b The length of motifs (left) and the distance between the center and 5' end (right)
c Applied windows for the center of motifs
d The maximal number of allowed mismatches for motif consensus to remain functional