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. Author manuscript; available in PMC: 2010 May 15.
Published in final edited form as: Proteins. 2009 May 15;75(3):540–549. doi: 10.1002/prot.22262

Figure 9.

Figure 9

The bonus cost function with parameters Dij = 7, α = 200, β = 50. This type of cost function is 0 when Dij < Aij or Dij > Bij, otherwise it behaves as described in Equation 1. The bonus cost functions are useful for low quality constraints. As the name indicates, a bonus constraint only rewards models when the constraint is satisfied.