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. Author manuscript; available in PMC: 2010 May 15.
Published in final edited form as: Proteins. 2009 May 15;75(3):540–549. doi: 10.1002/prot.22262

Table 4.

Optimized weights for alignment-based cost functions. Weights were optimized to maximize a weighted measure of correlation (τ3, described elsewhere [3]) with GDT_TS on complete models.

Cost Function Weight Pooled SD
align_constraint 9.95242 6.16873
noncontacts 59.6361 0.854129
noncontacts_bonus 30.4114 0.300117