. Author manuscript; available in PMC: 2009 Oct 1.

Published in final edited form as: Genes Immun. 2009 Feb 12;10(3):267–272. doi: 10.1038/gene.2009.2

Table 6. Results of transmission disequilibrium testing for a haplotype block in LPLUNC1.

Haplotype	Frequency	Transmission: non-transmissions to affected offspring	Chi Square	Nominal p value	Permutation p value ^*
TAGAG	0.847	32.8 : 10.8	11.108	0.0009	0.001
TGGAG	0.075	4.1 : 17.1	7.963	0.0048	0.012
TAAAG	0.047	5.0 : 5.0	0	1	1
GAGGT	0.026	2.8 : 11.7	5.381	0.0204	0.068

Results of 100,000 cycles of permutation testing performed in Haploview v. 4.1